Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 6
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 6
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16239 | Canola | vacuole | 74.72 | 56.41 |
| Bra024640.1-P | Field mustard | vacuole | 79.06 | 56.32 |
| CDY14670 | Canola | endoplasmic reticulum, golgi, vacuole | 77.74 | 52.02 |
| AT1G70140.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 70.19 | 48.95 |
| VIT_01s0026g00950.t01 | Wine grape | endoplasmic reticulum | 51.13 | 33.21 |
| VIT_14s0108g00290.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 49.62 | 32.11 |
| KRG99223 | Soybean | golgi, vacuole | 44.53 | 30.49 |
| KRH45763 | Soybean | endoplasmic reticulum, vacuole | 44.91 | 30.13 |
| KRH69441 | Soybean | golgi, plasma membrane | 44.91 | 29.6 |
| KRH74702 | Soybean | endoplasmic reticulum | 45.28 | 29.56 |
| Solyc05g006430.1.1 | Tomato | endoplasmic reticulum | 43.77 | 29.55 |
| PGSC0003DMT400058304 | Potato | plasma membrane | 44.53 | 29.5 |
| GSMUA_Achr8P22610_001 | Banana | plasma membrane | 36.42 | 25.46 |
| GSMUA_Achr6P04430_001 | Banana | cytosol | 20.19 | 25.18 |
| AT1G59910.1 | Thale cress | nucleus | 42.64 | 24.33 |
| TraesCS6D01G291400.1 | Wheat | endoplasmic reticulum, plasma membrane | 38.68 | 22.75 |
| TraesCS6B01G342200.1 | Wheat | endoplasmic reticulum, plasma membrane | 38.49 | 22.64 |
| EES05554 | Sorghum | plasma membrane | 39.06 | 22.5 |
| TraesCS6A01G312000.2 | Wheat | plastid | 38.3 | 22.38 |
| HORVU6Hr1G076870.4 | Barley | plastid | 38.87 | 21.99 |
| AT4G15200.2 | Thale cress | extracellular, golgi, plasma membrane | 19.06 | 21.67 |
| Zm00001d017983_P001 | Maize | plasma membrane | 37.55 | 21.61 |
| KXG39193 | Sorghum | plastid | 33.02 | 20.54 |
| AT5G67470.1 | Thale cress | extracellular, plasma membrane, vacuole | 27.74 | 16.35 |
| AT5G54650.1 | Thale cress | extracellular, mitochondrion, nucleus, plasma membrane | 26.42 | 15.56 |
| AT5G07780.1 | Thale cress | plastid | 13.21 | 15.09 |
| AT2G43800.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 24.72 | 14.65 |
| AT3G32400.2 | Thale cress | cytosol | 13.58 | 14.55 |
| AT3G05470.1 | Thale cress | extracellular, golgi, plasma membrane | 22.83 | 13.69 |
| AT5G48360.1 | Thale cress | extracellular, vacuole | 19.06 | 12.92 |
| AT3G25500.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 24.91 | 12.56 |
| AT3G07540.1 | Thale cress | plasma membrane | 19.81 | 12.49 |
| AT5G07770.3 | Thale cress | plastid | 14.53 | 10.56 |
| AT1G31810.1 | Thale cress | cytosol | 20.57 | 8.86 |
| AT2G25050.1 | Thale cress | cytosol | 19.43 | 8.82 |
| AT1G42980.1 | Thale cress | cytosol | 4.91 | 8.7 |
| AT5G58160.1 | Thale cress | cytosol | 18.11 | 7.58 |
| AT5G07650.1 | Thale cress | cytosol | 11.51 | 7.48 |
| AT3G32420.1 | Thale cress | cytosol | 1.51 | 7.48 |
| AT5G07760.2 | Thale cress | cytosol, plastid | 12.08 | 7.38 |
| AT5G07740.2 | Thale cress | nucleus | 20.94 | 6.6 |
| AT3G25493.1 | Thale cress | vacuole | 0.57 | 1.88 |
Protein Annotations
| Gene3D:1.20.58.2220 | MapMan:20.2.2.6.1 | EntrezGene:839028 | UniProt:A0A1P8AS15 | ProteinID:ANM59449.1 | ArrayExpress:AT1G24150 |
| EnsemblPlantsGene:AT1G24150 | RefSeq:AT1G24150 | TAIR:AT1G24150 | RefSeq:AT1G24150-TAIR-G | EnsemblPlants:AT1G24150.2 | Symbol:ATFH4 |
| InterPro:FH2_Formin | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR015425 | RefSeq:NP_001321805.1 | PFAM:PF02181 | PFscan:PS51444 | PANTHER:PTHR23213 | PANTHER:PTHR23213:SF239 |
| SMART:SM00498 | SUPFAM:SSF101447 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0008487AB6 | SEG:seg |
Description
ATFH4formin homologue 4 [Source:TAIR;Acc:AT1G24150]
Coordinates
chr1:+:8549191..8552066
Molecular Weight (calculated)
58322.8 Da
IEP (calculated)
10.033
GRAVY (calculated)
-0.467
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMLMQPWP PFLPHLTLVF LTLILFFPNQ SFSQSDSPRN IETFFPNDTI TPPVQSPVLS PPQNPSSSSS DSDRGNILRA VLITAASTLL VAAVFFFLVH
101: KCRRRRNRVG GVDNTLQPPV PPLAEAALAR EGFTRFGGNV KGLILDENGL DVLYWRKLQQ SQRDNKGGSF RKEIIHGDDE EKNVIYSKSK KKSGPVTETP
201: LLRGRSSTSH SVIHNDNYRN ATTTHPPHVK TDSFEFVKPD PTPPPPPPPP IPVKQSATPP PPPPPKLKNN GPSPPPPPPL KKTAALSSSA SKKPPPAPRG
301: SSSGESSNGQ VKLKPLHWDK VNPDSDHSMV WDKIDRGSFS FDGDLMEALF GYVAVGKKSP DDGGDKKPSS ASPAQIFILD PRKSQNTAIV LKSLGMTRDE
401: LVESLMEGHD FHPDTLERLS RIAPTKEEQS AILQFDGDTK MLADAESFLF HLLKAVPCAF TRLNALLFRA NYYPEISNHN KNLQTLDLAC TELRSRGLFV
501: KLLEAILKSG NRMNAGTARE MLKLLISPRF
101: KCRRRRNRVG GVDNTLQPPV PPLAEAALAR EGFTRFGGNV KGLILDENGL DVLYWRKLQQ SQRDNKGGSF RKEIIHGDDE EKNVIYSKSK KKSGPVTETP
201: LLRGRSSTSH SVIHNDNYRN ATTTHPPHVK TDSFEFVKPD PTPPPPPPPP IPVKQSATPP PPPPPKLKNN GPSPPPPPPL KKTAALSSSA SKKPPPAPRG
301: SSSGESSNGQ VKLKPLHWDK VNPDSDHSMV WDKIDRGSFS FDGDLMEALF GYVAVGKKSP DDGGDKKPSS ASPAQIFILD PRKSQNTAIV LKSLGMTRDE
401: LVESLMEGHD FHPDTLERLS RIAPTKEEQS AILQFDGDTK MLADAESFLF HLLKAVPCAF TRLNALLFRA NYYPEISNHN KNLQTLDLAC TELRSRGLFV
501: KLLEAILKSG NRMNAGTARE MLKLLISPRF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.