Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g069660.1.1 | Tomato | mitochondrion | 49.53 | 15.59 |
| TraesCS2D01G190700.1 | Wheat | cytosol | 46.73 | 14.08 |
| TraesCS2A01G182900.1 | Wheat | cytosol, golgi, nucleus | 46.73 | 14.08 |
| TraesCS2B01G209500.1 | Wheat | cytosol | 45.79 | 13.8 |
| AT2G25050.1 | Thale cress | cytosol | 95.33 | 8.73 |
| CDX69992 | Canola | cytosol | 43.93 | 6.21 |
| GSMUA_Achr7P26420_001 | Banana | cytosol, mitochondrion | 51.4 | 5.91 |
| Bra009307.1-P | Field mustard | cytosol | 40.19 | 5.33 |
| CDX99027 | Canola | nucleus | 40.19 | 4.98 |
| AT5G58160.1 | Thale cress | cytosol | 56.07 | 4.74 |
| Zm00001d017027_P001 | Maize | cytosol | 10.28 | 4.6 |
| HORVU2Hr1G034470.10 | Barley | cytosol | 48.6 | 4.48 |
| AT1G31810.1 | Thale cress | cytosol | 47.66 | 4.15 |
| AT5G07740.2 | Thale cress | nucleus | 51.4 | 3.27 |
| AT4G15200.2 | Thale cress | extracellular, golgi, plasma membrane | 7.48 | 1.72 |
| AT1G24150.2 | Thale cress | endoplasmic reticulum | 7.48 | 1.51 |
| AT3G32400.2 | Thale cress | cytosol | 6.54 | 1.41 |
| AT1G70140.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 9.35 | 1.32 |
| AT3G05470.1 | Thale cress | extracellular, golgi, plasma membrane | 7.48 | 0.9 |
| AT5G48360.1 | Thale cress | extracellular, vacuole | 6.54 | 0.9 |
| AT2G43800.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 6.54 | 0.78 |
| AT3G25500.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 7.48 | 0.76 |
| TraesCS2D01G190800.1 | Wheat | cytosol | 2.8 | 0.74 |
| TraesCS2B01G209600.1 | Wheat | cytosol | 2.8 | 0.74 |
| TraesCS2A01G183000.1 | Wheat | cytosol | 2.8 | 0.74 |
| AT3G07540.1 | Thale cress | plasma membrane | 5.61 | 0.71 |
| AT5G67470.1 | Thale cress | extracellular, plasma membrane, vacuole | 5.61 | 0.67 |
| AT5G54650.1 | Thale cress | extracellular, mitochondrion, nucleus, plasma membrane | 5.61 | 0.67 |
| AT1G59910.1 | Thale cress | nucleus | 4.67 | 0.54 |
| AT1G42980.1 | Thale cress | cytosol | 0.93 | 0.33 |
| AT5G07650.1 | Thale cress | cytosol | 1.87 | 0.25 |
| AT5G07760.2 | Thale cress | cytosol, plastid | 1.87 | 0.23 |
| Solyc06g069670.2.1 | Tomato | nucleus | 1.87 | 0.22 |
| AT5G07770.3 | Thale cress | plastid | 0.93 | 0.14 |
| AT3G25493.1 | Thale cress | vacuole | 0.0 | 0.0 |
| AT5G07780.1 | Thale cress | plastid | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:AT3G32420 | EnsemblPlants:AT3G32420.1 | EnsemblPlantsGene:AT3G32420 | EntrezGene:28719358 | Gene3D:2.60.40.1110 | InterPro:IPR014020 |
| InterPro:Tensin_C2-dom | PANTHER:PTHR23213 | PANTHER:PTHR23213:SF271 | PFAM:PF10409 | PFscan:PS51182 | ProteinID:ANM64166.1 |
| RefSeq:NP_001326212.1 | SMART:SM01326 | SUPFAM:SSF49562 | UniParc:UPI00084966B4 | UniProt:A0A1I9LNK8 | MapMan:35.1 |
Description
Actin-binding FH2 (Formin-like) protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNK8]
Coordinates
chr3:-:13374402..13375467
Molecular Weight (calculated)
12311.1 Da
IEP (calculated)
7.187
GRAVY (calculated)
0.033
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDRTSKVL FSMPKRSKAV RQYKKADCEL VKIDINCHIL GDVVLECITL GSDLEREEMM FRVVFNTAFL RSNILTLNRG EIDVLLNTTD RFPKDFSAEV
101: TTYLLFL
101: TTYLLFL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.