Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 3
- extracellular 3
- vacuole 3
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G25493.1 | Thale cress | vacuole | 12.94 | 85.0 |
| CDY15092 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 83.35 | 82.72 |
| CDY52291 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 84.59 | 82.62 |
| Bra013217.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid, vacuole | 84.59 | 81.48 |
| PGSC0003DMT400056393 | Potato | cytosol | 33.4 | 73.12 |
| VIT_00s0227g00200.t01 | Wine grape | cytosol | 10.28 | 70.59 |
| GSMUA_Achr11P... | Banana | mitochondrion, plastid | 28.26 | 69.07 |
| Os01t0897700-01 | Rice | cytosol | 15.7 | 67.62 |
| GSMUA_Achr6P18370_001 | Banana | nucleus | 34.44 | 64.3 |
| GSMUA_Achr5P25760_001 | Banana | mitochondrion | 25.5 | 61.05 |
| KRH47952 | Soybean | cytosol | 43.77 | 59.28 |
| Solyc09g042740.2.1 | Tomato | endoplasmic reticulum, vacuole | 47.29 | 54.68 |
| Solyc06g082910.2.1 | Tomato | extracellular | 47.67 | 53.53 |
| KRH06515 | Soybean | endoplasmic reticulum, plastid, vacuole | 54.8 | 53.38 |
| PGSC0003DMT400071147 | Potato | endoplasmic reticulum, golgi | 47.38 | 52.75 |
| KRH00989 | Soybean | extracellular, golgi, vacuole | 48.91 | 49.47 |
| KRH40232 | Soybean | endoplasmic reticulum, extracellular | 48.53 | 49.18 |
| GSMUA_Achr10P... | Banana | plastid | 37.49 | 49.07 |
| HORVU5Hr1G079700.1 | Barley | mitochondrion, plastid | 29.59 | 46.35 |
| GSMUA_Achr2P11400_001 | Banana | endoplasmic reticulum, extracellular | 31.68 | 46.06 |
| OQU88036 | Sorghum | extracellular, plasma membrane | 40.91 | 45.74 |
| TraesCS3A01G397900.1 | Wheat | plasma membrane | 41.2 | 45.63 |
| TraesCS3B01G429900.1 | Wheat | plasma membrane | 41.29 | 45.49 |
| HORVU3Hr1G089510.1 | Barley | plasma membrane | 41.1 | 45.43 |
| Zm00001d012158_P001 | Maize | extracellular, plasma membrane | 40.53 | 44.8 |
| Zm00001d042506_P002 | Maize | extracellular, plasma membrane | 40.63 | 44.67 |
| TraesCS3D01G391800.1 | Wheat | mitochondrion | 40.34 | 44.54 |
| AT2G43800.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 37.87 | 44.52 |
| TraesCS5D01G311600.1 | Wheat | golgi, plasma membrane | 33.11 | 44.27 |
| Os09t0517600-01 | Rice | endoplasmic reticulum, plasma membrane | 32.92 | 43.91 |
| TraesCS5A01G304700.1 | Wheat | golgi | 32.73 | 43.71 |
| TraesCS5B01G305100.1 | Wheat | golgi, plasma membrane | 32.73 | 43.71 |
| Zm00001d021173_P001 | Maize | plasma membrane | 31.11 | 42.91 |
| GSMUA_Achr9P02450_001 | Banana | plasma membrane, plastid | 33.97 | 42.55 |
| AT5G67470.1 | Thale cress | extracellular, plasma membrane, vacuole | 35.59 | 41.6 |
| Zm00001d006132_P001 | Maize | golgi, mitochondrion, plastid | 32.26 | 40.26 |
| EER97050 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 32.45 | 40.12 |
| TraesCS1D01G010200.1 | Wheat | plastid | 20.74 | 38.38 |
| AT5G48360.1 | Thale cress | extracellular, vacuole | 28.26 | 37.98 |
| TraesCS1B01G059400.1 | Wheat | plastid | 20.08 | 37.48 |
| TraesCS1A01G011800.1 | Wheat | extracellular | 18.55 | 36.59 |
| GSMUA_Achr7P23740_001 | Banana | plastid | 39.77 | 34.86 |
| AT3G07540.1 | Thale cress | plasma membrane | 27.59 | 34.48 |
| HORVU1Hr1G002300.8 | Barley | plastid | 23.5 | 34.12 |
| Os05t0104000-00 | Rice | endoplasmic reticulum, plasma membrane | 25.31 | 32.05 |
| AT3G05470.1 | Thale cress | extracellular, golgi, plasma membrane | 25.88 | 30.77 |
| EES17525 | Sorghum | endoplasmic reticulum, plasma membrane | 23.22 | 29.79 |
| AT1G70140.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 21.5 | 29.74 |
| TraesCS1B01G414300.1 | Wheat | endoplasmic reticulum | 23.69 | 29.68 |
| AT5G54650.1 | Thale cress | extracellular, mitochondrion, nucleus, plasma membrane | 24.26 | 28.33 |
| AT1G24150.2 | Thale cress | endoplasmic reticulum | 12.56 | 24.91 |
| AT3G32400.2 | Thale cress | cytosol | 11.42 | 24.24 |
| AT4G15200.2 | Thale cress | extracellular, golgi, plasma membrane | 10.47 | 23.61 |
| AT5G07780.1 | Thale cress | plastid | 10.37 | 23.49 |
| AT1G59910.1 | Thale cress | nucleus | 17.98 | 20.34 |
| AT5G07770.3 | Thale cress | plastid | 11.13 | 16.05 |
| AT1G42980.1 | Thale cress | cytosol | 4.38 | 15.38 |
| Zm00001d035757_P003 | Maize | plasma membrane | 23.41 | 14.62 |
| AT2G25050.1 | Thale cress | cytosol | 16.18 | 14.55 |
| AT5G58160.1 | Thale cress | cytosol | 17.03 | 14.14 |
| AT1G31810.1 | Thale cress | cytosol | 15.79 | 13.5 |
| AT5G07760.2 | Thale cress | cytosol, plastid | 10.37 | 12.57 |
| AT5G07650.1 | Thale cress | cytosol | 9.51 | 12.27 |
| AT5G07740.2 | Thale cress | nucleus | 15.89 | 9.92 |
| AT3G32420.1 | Thale cress | cytosol | 0.76 | 7.48 |
Protein Annotations
| Gene3D:1.20.58.2220 | MapMan:20.2.2.6.1 | EntrezGene:822136 | UniProt:A0A178VBY1 | ProteinID:AEE77017.1 | EMBL:AF174427 |
| Symbol:AFH1 | EMBL:AK226743 | ArrayExpress:AT3G25500 | EnsemblPlantsGene:AT3G25500 | RefSeq:AT3G25500 | TAIR:AT3G25500 |
| RefSeq:AT3G25500-TAIR-G | EnsemblPlants:AT3G25500.1 | TAIR:AT3G25500.1 | EMBL:AY080793 | EMBL:AY142579 | Unigene:At.24691 |
| ProteinID:BAB01320.1 | ncoils:Coil | InterPro:FH2_Formin | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030036 | GO:GO:0030312 |
| GO:GO:0045010 | GO:GO:0051015 | GO:GO:0051016 | InterPro:IPR015425 | RefSeq:NP_189177.1 | ProteinID:OAP03181.1 |
| PFAM:PF02181 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51444 | PANTHER:PTHR23213 | PANTHER:PTHR23213:SF261 | UniProt:Q9SE97 |
| SMART:SM00498 | SUPFAM:SSF101447 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000AC39D | SEG:seg |
Description
FH1Formin-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VBY1]
Coordinates
chr3:-:9251093..9255083
Molecular Weight (calculated)
115154.0 Da
IEP (calculated)
8.508
GRAVY (calculated)
-0.494
Length
1051 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLFFLFFFYL LLSSSSDLVF ADRRVLHEPF FPIDSPPPSP PSPPPLPKLP FSSTTPPSSS DPNASPFFPL YPSSPPPPSP ASFASFPANI SSLIVPHATK
0101: SPPNSKKLLI VAISAVSSAA LVALLIALLY WRRSKRNQDL NFSDDSKTYT TDSSRRVYPP PPATAPPTRR NAEARSKQRT TTSSTNNNSS EFLYLGTMVN
0201: QRGIDEQSLS NNGSSSRKLE SPDLQPLPPL MKRSFRLNPD VGSIGEEDEE DEFYSPRGSQ SGREPLNRVG LPGQNPRSVN NDTISCSSSS SGSPGRSTFI
0301: SISPSMSPKR SEPKPPVIST PEPAELTDYR FVRSPSLSLA SLSSGLKNSD EVGLNQIFRS PTVTSLTTSP ENNKKENSPL SSTSTSPERR PNDTPEAYLR
0401: SPSHSSASTS PYRCFQKSPE VLPAFMSNLR QGLQSQLLSS PSNSHGGQGF LKQLDALRSR SPSSSSSSVC SSPEKASHKS PVTSPKLSSR NSQSLSSSPD
0501: RDFSHSLDVS PRISNISPQI LQSRVPPPPP PPPPLPLWGR RSQVTTKADT ISRPPSLTPP SHPFVIPSEN LPVTSSPMET PETVCASEAA EETPKPKLKA
0601: LHWDKVRASS DREMVWDHLR SSSFKLDEEM IETLFVAKSL NNKPNQSQTT PRCVLPSPNQ ENRVLDPKKA QNIAILLRAL NVTIEEVCEA LLEGNADTLG
0701: TELLESLLKM APTKEEERKL KAYNDDSPVK LGHAEKFLKA MLDIPFAFKR VDAMLYVANF ESEVEYLKKS FETLEAACEE LRNSRMFLKL LEAVLKTGNR
0801: MNVGTNRGDA HAFKLDTLLK LVDVKGADGK TTLLHFVVQE IIRAEGTRLS GNNTQTDDIK CRKLGLQVVS SLCSELSNVK KAAAMDSEVL SSYVSKLSQG
0901: IAKINEAIQV QSTITEESNS QRFSESMKTF LKRAEEEIIR VQAQESVALS LVKEITEYFH GNSAKEEAHP FRIFLVVRDF LGVVDRVCKE VGMINERTMV
1001: SSAHKFPVPV NPMMPQPLPG LVGRRQSSSS SSSSSTSSSD EDEHNSISLV S
0101: SPPNSKKLLI VAISAVSSAA LVALLIALLY WRRSKRNQDL NFSDDSKTYT TDSSRRVYPP PPATAPPTRR NAEARSKQRT TTSSTNNNSS EFLYLGTMVN
0201: QRGIDEQSLS NNGSSSRKLE SPDLQPLPPL MKRSFRLNPD VGSIGEEDEE DEFYSPRGSQ SGREPLNRVG LPGQNPRSVN NDTISCSSSS SGSPGRSTFI
0301: SISPSMSPKR SEPKPPVIST PEPAELTDYR FVRSPSLSLA SLSSGLKNSD EVGLNQIFRS PTVTSLTTSP ENNKKENSPL SSTSTSPERR PNDTPEAYLR
0401: SPSHSSASTS PYRCFQKSPE VLPAFMSNLR QGLQSQLLSS PSNSHGGQGF LKQLDALRSR SPSSSSSSVC SSPEKASHKS PVTSPKLSSR NSQSLSSSPD
0501: RDFSHSLDVS PRISNISPQI LQSRVPPPPP PPPPLPLWGR RSQVTTKADT ISRPPSLTPP SHPFVIPSEN LPVTSSPMET PETVCASEAA EETPKPKLKA
0601: LHWDKVRASS DREMVWDHLR SSSFKLDEEM IETLFVAKSL NNKPNQSQTT PRCVLPSPNQ ENRVLDPKKA QNIAILLRAL NVTIEEVCEA LLEGNADTLG
0701: TELLESLLKM APTKEEERKL KAYNDDSPVK LGHAEKFLKA MLDIPFAFKR VDAMLYVANF ESEVEYLKKS FETLEAACEE LRNSRMFLKL LEAVLKTGNR
0801: MNVGTNRGDA HAFKLDTLLK LVDVKGADGK TTLLHFVVQE IIRAEGTRLS GNNTQTDDIK CRKLGLQVVS SLCSELSNVK KAAAMDSEVL SSYVSKLSQG
0901: IAKINEAIQV QSTITEESNS QRFSESMKTF LKRAEEEIIR VQAQESVALS LVKEITEYFH GNSAKEEAHP FRIFLVVRDF LGVVDRVCKE VGMINERTMV
1001: SSAHKFPVPV NPMMPQPLPG LVGRRQSSSS SSSSSTSSSD EDEHNSISLV S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.