Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039436.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 81.0 | 87.42 |
| CDY27766 | Canola | golgi, plasma membrane, vacuole | 78.62 | 87.31 |
| CDY05170 | Canola | extracellular, golgi, plasma membrane | 72.29 | 85.77 |
| CDX74146 | Canola | extracellular, golgi, plasma membrane | 75.23 | 82.81 |
| Bra001148.1-P | Field mustard | extracellular, golgi, plasma membrane | 77.04 | 82.75 |
| CDY40709 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 76.24 | 82.5 |
| GSMUA_Achr7P18740_001 | Banana | nucleus | 34.28 | 59.41 |
| KRG92894 | Soybean | endoplasmic reticulum, vacuole | 49.55 | 49.1 |
| KRG96818 | Soybean | plasma membrane | 43.21 | 48.29 |
| KRH33895 | Soybean | plasma membrane | 49.66 | 47.77 |
| KRH68527 | Soybean | plasma membrane | 42.65 | 47.42 |
| VIT_14s0060g02330.t01 | Wine grape | golgi, plasma membrane, vacuole | 50.91 | 46.97 |
| PGSC0003DMT400063542 | Potato | extracellular, golgi, plasma membrane | 47.62 | 46.78 |
| Solyc01g099650.2.1 | Tomato | nucleus | 47.62 | 46.62 |
| Os04t0461800-01 | Rice | extracellular | 39.82 | 42.26 |
| TraesCS2B01G344200.1 | Wheat | golgi | 38.46 | 40.62 |
| TraesCS2D01G325200.1 | Wheat | golgi, mitochondrion | 38.35 | 40.26 |
| EES12298 | Sorghum | plasma membrane | 38.8 | 40.26 |
| Zm00001d003406_P002 | Maize | plasma membrane | 38.01 | 39.95 |
| TraesCS2A01G337800.1 | Wheat | mitochondrion, plasma membrane | 38.46 | 37.44 |
| EES13879 | Sorghum | golgi | 34.28 | 33.37 |
| Zm00001d032225_P001 | Maize | golgi | 33.48 | 33.18 |
| Os08t0431200-00 | Rice | cytosol | 17.99 | 30.58 |
| AT5G67470.1 | Thale cress | extracellular, plasma membrane, vacuole | 30.66 | 30.14 |
| AT2G43800.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 28.05 | 27.74 |
| AT5G54650.1 | Thale cress | extracellular, mitochondrion, nucleus, plasma membrane | 28.17 | 27.67 |
| AT3G25500.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 30.77 | 25.88 |
| AT1G70140.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 22.17 | 25.79 |
| AT3G25493.1 | Thale cress | vacuole | 4.52 | 25.0 |
| AT5G48360.1 | Thale cress | extracellular, vacuole | 21.49 | 24.3 |
| AT1G24150.2 | Thale cress | endoplasmic reticulum | 13.69 | 22.83 |
| AT3G07540.1 | Thale cress | plasma membrane | 20.81 | 21.88 |
| AT5G07780.1 | Thale cress | plastid | 11.31 | 21.55 |
| AT3G32400.2 | Thale cress | cytosol | 11.99 | 21.41 |
| AT4G15200.2 | Thale cress | extracellular, golgi, plasma membrane | 10.97 | 20.82 |
| AT1G59910.1 | Thale cress | nucleus | 21.49 | 20.45 |
| AT1G42980.1 | Thale cress | cytosol | 5.77 | 17.06 |
| AT5G07770.3 | Thale cress | plastid | 12.56 | 15.23 |
| AT2G25050.1 | Thale cress | cytosol | 16.52 | 12.5 |
| AT1G31810.1 | Thale cress | cytosol | 17.19 | 12.36 |
| AT5G07650.1 | Thale cress | cytosol | 10.52 | 11.41 |
| AT5G58160.1 | Thale cress | cytosol | 16.18 | 11.3 |
| AT5G07760.2 | Thale cress | cytosol, plastid | 10.86 | 11.07 |
| AT5G07740.2 | Thale cress | nucleus | 17.31 | 9.09 |
| AT3G32420.1 | Thale cress | cytosol | 0.9 | 7.48 |
Protein Annotations
| Gene3D:1.20.58.2220 | MapMan:20.2.2.6.1 | EntrezGene:819712 | UniProt:A0A178VCE3 | ProteinID:AAF64546.1 | ProteinID:AEE74244.1 |
| ArrayExpress:AT3G05470 | EnsemblPlantsGene:AT3G05470 | RefSeq:AT3G05470 | TAIR:AT3G05470 | RefSeq:AT3G05470-TAIR-G | EnsemblPlants:AT3G05470.1 |
| TAIR:AT3G05470.1 | InterPro:FH2_Formin | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR015425 | RefSeq:NP_187198.1 | ProteinID:OAP03899.1 |
| PFAM:PF02181 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51444 | PANTHER:PTHR23213 | PANTHER:PTHR23213:SF177 |
| UniProt:Q9MA60 | SMART:SM00498 | SUPFAM:SSF101447 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A7DDB |
| SEG:seg | : | : | : | : | : |
Description
FH11Formin-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VCE3]
Coordinates
chr3:-:1579419..1583073
Molecular Weight (calculated)
98540.3 Da
IEP (calculated)
9.087
GRAVY (calculated)
-0.480
Length
884 amino acids
Sequence
(BLAST)
(BLAST)
001: MVYFRQIFLM IIVVSLHCCK VRFFCIVANA KELDDWKVLT VENGERYRTH VGRYAGEEGG EKIKLRVLEK FRALLDLIKP STSRRRNLAE SASFSPWPAP
101: SPSPFPNGGP IESPAYPPAP PRPIPPHLRR PLPQRTHPLE QPEIQRRKHE KGGTFKKILV PVVASTASAI GFVVCVVGVF CLCARRKRKM NGKTLSFKRK
201: KGKSQSSTRK VSVNPTLDFL YLNSLGVDLE RQNSVSVKEI RETEKDLNGI NGGLLEEEVK RSIETEISHD WDNASSYSTK EIVSVHENDE EQTVNSVSVP
301: VVVINDSSDD DESFHSVGGG SQYSNPRLSN ASSASGSVNV GSSQRFSEHK LDIPECSRSD FGISVSAPPP PPPPPPPLPQ FSNKRIHTLS SPETANLQTL
401: SSQLCEKLCA SSSKTSFPIN VPNSQPRPPP PPPPPQQLQV AGINKTPPPP LSLDFSERRP LGKDGAPLPK LKPLHWDKVR ATPDRTMVWD KLRTSSFELD
501: EEMIESLFGY TMQSSTKNEE GKSKTPSPGK HLLEPKRLQN FTILLKALNA TADQICSALG KGEGLCLQQL EALVKMVPTK EEELKLRSYK GAVDELGSAE
601: KFLRALVGVP FAFQRAEAML YRETFEDEVV HLRNSFSMLE EACKELKSSR LFLKLLEAVL KTGNRMNVGT IRGGAKAFKL DALLKLSDVK GTDGKTTLLH
701: FVVQEISRSE GIRVSDSIMG RIMNQRSNKN RTPEEKEEDY RRMGLDLVSG LNTELRNVKK TATIDLEGLV TSVSNLRDGL GQLSCLASEK LKGDEENRAF
801: VSSMSSFLRY GEKSLEELRE DEKRIMERVG EIAEYFHGDV RGDEKNPLRI FVIVRDFLGM LDHVCRELRC VRVPNSPSPL APFR
101: SPSPFPNGGP IESPAYPPAP PRPIPPHLRR PLPQRTHPLE QPEIQRRKHE KGGTFKKILV PVVASTASAI GFVVCVVGVF CLCARRKRKM NGKTLSFKRK
201: KGKSQSSTRK VSVNPTLDFL YLNSLGVDLE RQNSVSVKEI RETEKDLNGI NGGLLEEEVK RSIETEISHD WDNASSYSTK EIVSVHENDE EQTVNSVSVP
301: VVVINDSSDD DESFHSVGGG SQYSNPRLSN ASSASGSVNV GSSQRFSEHK LDIPECSRSD FGISVSAPPP PPPPPPPLPQ FSNKRIHTLS SPETANLQTL
401: SSQLCEKLCA SSSKTSFPIN VPNSQPRPPP PPPPPQQLQV AGINKTPPPP LSLDFSERRP LGKDGAPLPK LKPLHWDKVR ATPDRTMVWD KLRTSSFELD
501: EEMIESLFGY TMQSSTKNEE GKSKTPSPGK HLLEPKRLQN FTILLKALNA TADQICSALG KGEGLCLQQL EALVKMVPTK EEELKLRSYK GAVDELGSAE
601: KFLRALVGVP FAFQRAEAML YRETFEDEVV HLRNSFSMLE EACKELKSSR LFLKLLEAVL KTGNRMNVGT IRGGAKAFKL DALLKLSDVK GTDGKTTLLH
701: FVVQEISRSE GIRVSDSIMG RIMNQRSNKN RTPEEKEEDY RRMGLDLVSG LNTELRNVKK TATIDLEGLV TSVSNLRDGL GQLSCLASEK LKGDEENRAF
801: VSSMSSFLRY GEKSLEELRE DEKRIMERVG EIAEYFHGDV RGDEKNPLRI FVIVRDFLGM LDHVCRELRC VRVPNSPSPL APFR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.