Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039561.1-P | Field mustard | golgi | 76.82 | 42.77 |
| CDY06511 | Canola | endoplasmic reticulum, golgi, plasma membrane | 70.82 | 41.3 |
| CDY22934 | Canola | nucleus, plastid | 64.16 | 41.02 |
| CDY08280 | Canola | endoplasmic reticulum, golgi, plasma membrane | 69.53 | 40.65 |
| Bra037087.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 69.74 | 39.83 |
| CDY53556 | Canola | nucleus | 72.1 | 39.76 |
| VIT_12s0059g02680.t01 | Wine grape | golgi | 36.91 | 21.47 |
| GSMUA_Achr2P14090_001 | Banana | mitochondrion | 30.47 | 21.35 |
| Solyc07g052730.2.1 | Tomato | golgi | 42.92 | 20.94 |
| PGSC0003DMT400036332 | Potato | plasma membrane | 41.42 | 20.91 |
| KRH25436 | Soybean | endoplasmic reticulum, golgi, vacuole | 37.12 | 20.84 |
| KRH56076 | Soybean | endoplasmic reticulum | 37.55 | 20.78 |
| Solyc05g046120.2.1 | Tomato | plasma membrane | 40.34 | 20.48 |
| AT5G54650.1 | Thale cress | extracellular, mitochondrion, nucleus, plasma membrane | 38.2 | 19.78 |
| GSMUA_Achr3P23040_001 | Banana | cytosol, mitochondrion, plastid | 26.82 | 19.26 |
| AT1G24150.2 | Thale cress | endoplasmic reticulum | 21.67 | 19.06 |
| GSMUA_Achr8P07370_001 | Banana | endoplasmic reticulum, golgi | 18.88 | 17.71 |
| Os02t0161100-01 | Rice | golgi | 30.69 | 16.23 |
| TraesCS6D01G124300.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 28.11 | 15.41 |
| TraesCS6B01G163200.1 | Wheat | plasma membrane | 27.9 | 15.4 |
| TraesCS6A01G135200.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 27.9 | 15.29 |
| Zm00001d006549_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 30.04 | 15.18 |
| EES04559 | Sorghum | plasma membrane | 27.68 | 15.11 |
| EER99497 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 29.18 | 14.99 |
| Os07t0545500-01 | Rice | plasma membrane | 29.61 | 14.85 |
| Os04t0100300-00 | Rice | plasma membrane | 26.18 | 14.82 |
| EES10325 | Sorghum | golgi | 30.26 | 14.63 |
| Zm00001d004557_P002 | Maize | golgi, plasma membrane, vacuole | 29.61 | 14.59 |
| HORVU0Hr1G015390.6 | Barley | cytosol, plasma membrane, plastid | 25.97 | 14.47 |
| AT5G67470.1 | Thale cress | extracellular, plasma membrane, vacuole | 27.47 | 14.24 |
| Zm00001d024947_P005 | Maize | plasma membrane | 29.83 | 13.86 |
| TraesCS2B01G239500.1 | Wheat | plasma membrane | 27.04 | 13.39 |
| TraesCS2A01G214500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.82 | 13.21 |
| TraesCS2D01G220300.1 | Wheat | plasma membrane | 26.82 | 13.06 |
| Zm00001d015326_P003 | Maize | mitochondrion, plastid | 28.11 | 12.94 |
| TraesCS2A01G044700.1 | Wheat | extracellular, plasma membrane | 28.33 | 12.72 |
| AT1G70140.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 20.6 | 12.63 |
| TraesCS2D01G043300.1 | Wheat | extracellular, plasma membrane | 27.68 | 12.57 |
| TraesCS2B01G056800.1 | Wheat | extracellular, plasma membrane | 28.11 | 12.5 |
| HORVU2Hr1G043830.5 | Barley | cytosol, nucleus, plastid | 26.39 | 11.96 |
| AT2G43800.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 22.75 | 11.86 |
| HORVU2Hr1G006690.1 | Barley | peroxisome | 21.24 | 11.34 |
| AT3G05470.1 | Thale cress | extracellular, golgi, plasma membrane | 20.82 | 10.97 |
| AT3G25500.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 23.61 | 10.47 |
| AT5G48360.1 | Thale cress | extracellular, vacuole | 17.38 | 10.36 |
| AT3G07540.1 | Thale cress | plasma membrane | 18.67 | 10.34 |
| AT5G07780.1 | Thale cress | plastid | 10.09 | 10.13 |
| AT3G32400.2 | Thale cress | cytosol | 10.09 | 9.49 |
| AT1G59910.1 | Thale cress | nucleus | 18.24 | 9.15 |
| AT1G31810.1 | Thale cress | cytosol | 19.96 | 7.56 |
| AT3G32420.1 | Thale cress | cytosol | 1.72 | 7.48 |
| AT2G25050.1 | Thale cress | cytosol | 18.45 | 7.36 |
| AT5G07770.3 | Thale cress | plastid | 11.16 | 7.13 |
| AT5G58160.1 | Thale cress | cytosol | 18.88 | 6.95 |
| AT5G07740.2 | Thale cress | nucleus | 21.24 | 5.88 |
| AT5G07760.2 | Thale cress | cytosol, plastid | 10.09 | 5.42 |
| AT5G07650.1 | Thale cress | cytosol | 8.37 | 4.79 |
| AT1G42980.1 | Thale cress | cytosol | 3.0 | 4.68 |
| PGSC0003DMT400067386 | Potato | cytosol | 3.0 | 4.03 |
| CDX94358 | Canola | mitochondrion, plastid | 1.07 | 3.21 |
| AT3G25493.1 | Thale cress | vacuole | 0.43 | 1.25 |
Protein Annotations
| Gene3D:1.20.58.2220 | MapMan:20.2.2.6.1 | EntrezGene:827184 | ProteinID:AEE83567.2 | Symbol:AFH3 | ArrayExpress:AT4G15200 |
| EnsemblPlantsGene:AT4G15200 | RefSeq:AT4G15200 | TAIR:AT4G15200 | RefSeq:AT4G15200-TAIR-G | EnsemblPlants:AT4G15200.2 | TAIR:AT4G15200.2 |
| UniProt:F4JJE8 | InterPro:FH2_Formin | Symbol:FH3 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR015425 | RefSeq:NP_001190736.2 | PFAM:PF02181 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001078 | PO:PO:0007616 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR01217 | PFscan:PS51444 | PANTHER:PTHR23213 | PANTHER:PTHR23213:SF195 | SUPFAM:SSF101447 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00084909B1 | SEG:seg | : | : |
Description
AFH3formin 3 [Source:TAIR;Acc:AT4G15200]
Coordinates
chr4:-:8662824..8666050
Molecular Weight (calculated)
50136.7 Da
IEP (calculated)
9.635
GRAVY (calculated)
-0.475
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRLRLAFLA ISLVVFVCVS EEIFSRGGLN LLRFSVYGED VAEQTWIHQN PRRKLISYPK KFSVSAPNLA FGPAPSFAPG PGPSFAPGPA PNPRSYDWLA
101: PASSPNEPPA ETPDESSPSP SEETPSVVAP SQSVPGPPRP PPQREKKDDI LMKLIIAVAS TAVLTFVFVA LMFLCCFKRN CNNAVGSRDG PRDEGPLLRL
201: STGSTENSPT VASTSRKMFS VASSKKRSFL SRVSLKRNGH EFSTAESSSA AGLPPLKLPP GRSAPPPPPA AAPPPQPPPP PPPKPQPPPP PKIARPPPAP
301: PKGAAPKRQG NTSSGDASDV DSETGAPKTK LKPFFWDKMA NPDQKMVWHE ISAGSFQFNE EAMESLFGYN DGNKNKNGQK STDSSLRESP LQYIQIIDTR
401: KAQNLSILLR ALNVTTEEVV DAIKEGNELP VELLQTLLKM APTSEEELKL RLYSGDLHLL GPRSGS
101: PASSPNEPPA ETPDESSPSP SEETPSVVAP SQSVPGPPRP PPQREKKDDI LMKLIIAVAS TAVLTFVFVA LMFLCCFKRN CNNAVGSRDG PRDEGPLLRL
201: STGSTENSPT VASTSRKMFS VASSKKRSFL SRVSLKRNGH EFSTAESSSA AGLPPLKLPP GRSAPPPPPA AAPPPQPPPP PPPKPQPPPP PKIARPPPAP
301: PKGAAPKRQG NTSSGDASDV DSETGAPKTK LKPFFWDKMA NPDQKMVWHE ISAGSFQFNE EAMESLFGYN DGNKNKNGQK STDSSLRESP LQYIQIIDTR
401: KAQNLSILLR ALNVTTEEVV DAIKEGNELP VELLQTLLKM APTSEEELKL RLYSGDLHLL GPRSGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.