Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES17525 | Sorghum | endoplasmic reticulum, plasma membrane | 43.32 | 89.01 |
| TraesCS1D01G010200.1 | Wheat | plastid | 24.12 | 71.48 |
| TraesCS1B01G059400.1 | Wheat | plastid | 23.71 | 70.87 |
| HORVU1Hr1G002300.8 | Barley | plastid | 29.83 | 69.34 |
| Os05t0104000-00 | Rice | endoplasmic reticulum, plasma membrane | 32.92 | 66.75 |
| TraesCS1A01G011800.1 | Wheat | extracellular | 19.9 | 62.85 |
| TraesCS1B01G414300.1 | Wheat | endoplasmic reticulum | 30.42 | 61.02 |
| VIT_00s0227g00200.t01 | Wine grape | cytosol | 3.33 | 36.6 |
| Bra029655.1-P | Field mustard | cytosol | 6.24 | 34.65 |
| PGSC0003DMT400056393 | Potato | cytosol | 9.45 | 33.12 |
| Bra012246.1-P | Field mustard | cytosol | 3.74 | 32.14 |
| AT3G25493.1 | Thale cress | vacuole | 2.79 | 29.38 |
| Bra001256.1-P | Field mustard | plastid | 6.6 | 29.13 |
| GSMUA_Achr2P11400_001 | Banana | endoplasmic reticulum, extracellular | 12.48 | 29.05 |
| CDX79799 | Canola | mitochondrion, plastid, vacuole | 13.67 | 28.97 |
| GSMUA_Achr9P02450_001 | Banana | plasma membrane, plastid | 14.08 | 28.25 |
| Bra004786.1-P | Field mustard | mitochondrion, plasma membrane, plastid | 14.32 | 28.12 |
| KRH71295 | Soybean | vacuole | 14.62 | 27.95 |
| CDY17909 | Canola | golgi, vacuole | 13.96 | 27.71 |
| KRH50174 | Soybean | vacuole | 14.62 | 27.46 |
| Zm00001d021173_P001 | Maize | plasma membrane | 12.42 | 27.43 |
| CDX83457 | Canola | golgi, plasma membrane, vacuole | 13.55 | 27.05 |
| CDY44259 | Canola | plasma membrane, vacuole | 13.49 | 26.93 |
| PGSC0003DMT400064911 | Potato | endoplasmic reticulum, plasma membrane | 12.06 | 26.89 |
| Solyc08g014430.2.1 | Tomato | nucleus | 12.06 | 26.82 |
| AT2G43800.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 14.2 | 26.73 |
| VIT_05s0094g00920.t01 | Wine grape | nucleus | 14.74 | 26.67 |
| Solyc12g019480.1.1 | Tomato | nucleus | 13.96 | 26.46 |
| PGSC0003DMT400013717 | Potato | plastid | 13.49 | 26.36 |
| Zm00001d006132_P001 | Maize | golgi, mitochondrion, plastid | 13.01 | 26.01 |
| KRH47952 | Soybean | cytosol | 11.82 | 25.64 |
| Bra000328.1-P | Field mustard | golgi, plasma membrane, vacuole | 13.61 | 25.59 |
| Zm00001d012158_P001 | Maize | extracellular, plasma membrane | 14.44 | 25.55 |
| Solyc09g042740.2.1 | Tomato | endoplasmic reticulum, vacuole | 13.78 | 25.52 |
| AT5G48360.1 | Thale cress | extracellular, vacuole | 11.82 | 25.45 |
| Solyc06g082910.2.1 | Tomato | extracellular | 14.14 | 25.43 |
| Zm00001d042506_P002 | Maize | extracellular, plasma membrane | 14.32 | 25.21 |
| PGSC0003DMT400071147 | Potato | endoplasmic reticulum, golgi | 13.96 | 24.89 |
| Zm00001d028089_P001 | Maize | plasma membrane | 13.01 | 24.83 |
| Zm00001d021985_P001 | Maize | plasma membrane | 11.53 | 24.46 |
| CDX74041 | Canola | golgi, plasma membrane, plastid | 10.28 | 24.26 |
| CDY35941 | Canola | plastid | 10.75 | 24.17 |
| CDY07990 | Canola | golgi, plasma membrane, plastid | 10.34 | 24.1 |
| KRH00989 | Soybean | extracellular, golgi, vacuole | 14.85 | 24.06 |
| Zm00001d048142_P001 | Maize | plasma membrane | 12.3 | 24.04 |
| KRH40232 | Soybean | endoplasmic reticulum, extracellular | 14.79 | 24.01 |
| Zm00001d013926_P001 | Maize | extracellular, plasma membrane | 11.88 | 23.95 |
| KRH06515 | Soybean | endoplasmic reticulum, plastid, vacuole | 15.21 | 23.73 |
| AT3G25500.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 14.62 | 23.41 |
| Zm00001d032545_P001 | Maize | plasma membrane | 11.82 | 23.17 |
| CDY15092 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 14.5 | 23.04 |
| CDY52291 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 14.68 | 22.96 |
| CDY28040 | Canola | plastid | 10.4 | 22.73 |
| Bra013217.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid, vacuole | 14.68 | 22.64 |
| Bra037491.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 10.81 | 22.55 |
| CDX86310 | Canola | endoplasmic reticulum, plasma membrane | 10.75 | 22.43 |
| CDX85333 | Canola | plasma membrane | 10.87 | 22.24 |
| Zm00001d030781_P001 | Maize | cytosol | 1.37 | 21.5 |
| AT3G07540.1 | Thale cress | plasma membrane | 10.52 | 21.05 |
| Zm00001d003406_P002 | Maize | plasma membrane | 10.04 | 20.1 |
| Zm00001d017983_P001 | Maize | plasma membrane | 10.46 | 19.11 |
| Zm00001d032225_P001 | Maize | golgi | 9.92 | 18.72 |
| Zm00001d006549_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 9.98 | 18.22 |
| Zm00001d004557_P002 | Maize | golgi, plasma membrane, vacuole | 9.57 | 17.02 |
| Zm00001d024947_P005 | Maize | plasma membrane | 9.69 | 16.25 |
| Zm00001d015326_P003 | Maize | mitochondrion, plastid | 9.21 | 15.32 |
| Zm00001d030780_P001 | Maize | cytosol | 1.54 | 14.61 |
| Zm00001d050024_P001 | Maize | cytosol | 7.37 | 8.95 |
| Zm00001d018371_P001 | Maize | cytosol | 6.54 | 7.78 |
| Zm00001d006758_P003 | Maize | cytosol | 6.54 | 6.79 |
| Zm00001d022040_P002 | Maize | cytosol, mitochondrion, nucleus, plasma membrane | 6.6 | 6.53 |
| Zm00001d032101_P001 | Maize | cytosol | 2.44 | 6.02 |
| Zm00001d017027_P001 | Maize | cytosol | 0.77 | 5.44 |
| Zm00001d041515_P003 | Maize | mitochondrion | 6.48 | 5.09 |
| Zm00001d045102_P001 | Maize | cytosol | 1.66 | 4.33 |
| Zm00001d030782_P001 | Maize | mitochondrion | 4.28 | 3.52 |
Protein Annotations
| Gene3D:1.20.58.2220 | EntrezGene:100382909 | MapMan:20.2.2.6.1 | MapMan:22.6.5.7 | UniProt:A0A1D6LIJ2 | ProteinID:AQK79622.1 |
| InterPro:CNH_dom | InterPro:Clathrin_H-chain/VPS_repeat | InterPro:FH2_Formin | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| InterPro:IPR000547 | InterPro:IPR001180 | InterPro:IPR015425 | PFAM:PF00780 | PFAM:PF02181 | PFAM:PF10366 |
| PFAM:PF10367 | PFscan:PS50219 | PFscan:PS50236 | PFscan:PS51444 | PANTHER:PTHR23213 | PANTHER:PTHR23213:SF250 |
| SMART:SM00498 | SUPFAM:SSF101447 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0008427EE5 | InterPro:VPS39/TGF_beta_rcpt-assoc_1 |
| InterPro:VPS39/TGF_beta_rcpt-assoc_2 | EnsemblPlantsGene:Zm00001d035757 | EnsemblPlants:Zm00001d035757_P003 | EnsemblPlants:Zm00001d035757_T003 | SEG:seg | : |
Description
Vacuolar sorting protein 39
Coordinates
chr6:-:45715257..45726111
Molecular Weight (calculated)
183741.0 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.154
Length
1683 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLPPPPAFL PLLFSLLLLL PAATISTTQT NATLPSPPLF PPPPPAAPHP PHRHHHTASP RTTLTPRPPP SLTPPPRHPT PTPVAVPPAQ ASPPTPPPTP
0101: TPAPPVATPP TPKYPSSSAT PSTGDPYPFT NNPFFPTANS PPPPIPATET QPSSSGDGSL PTFPANISTL VAPTPRASGS RRFPVLQTLL LSLLSLCLIL
0201: LSALLSIHLV RRLRHRGGAA ASSPSAAQRR SASNHHQDDD NDDGDEEGRS LKPPPMPTSS TNPSTEFLYL GTLATPPPPG PQHPGTSSSL RPGSPELRPL
0301: PPLPRVGPPS GEFLSRSSAS DPSTVPPAAA ADASSSSLSP SSPSASSPTL GSSPVHFRPP TIPQPRGRAP NPSPPKRRPS PPKGAAEPVA AHGWNPFVPL
0401: PPRPAVASSD DGDSDQMMDL RKSRPLHSDK LKPGSLHMKD EVIQLYLNNS AAVAAPREVC LLGALRCHGI GMIVGALGVS KEQLKDALLE GNVHGLGVEA
0501: LQMLTQMVLS NEEELKIKYF KDDSLNRLCP VDVFLKAMLD VPFVFKRVDA MLYIASFYLE INRLRMSYAT LEGACQEMRS SRLFHKVLEA VVNFGNFMST
0601: NSGSPSSKGL EPNTVLKIAD VKGADGKAAL MQFIVQEIVK PEGYDVMQHG SGACKMSTNT LQCDAECRKH GLEVVAKLAA QLSNTKKAAS IDIKRLSQSV
0701: SELGMGLGKV HDVVRLNSMV TSVDSARRFH NSMSTFLRHA EEEILKLQSQ ESICLSSVKE MAEWFIGESV NDEAHMFRIF AGVKEFLAML DHICKEAGEL
0801: FGLVWFLVLA VDENDVMDPS TPEFLRLLPI GATLPVSAIV PLPSVARLLV LADGLLLLAD PLLSRPVRRL GSLRSVTAVA ARRVVLADPS SCSVAISVGK
0901: KLLRVDFTLH DADELDVQTR EIASVEGVKA LAWVDDSVFV ATATGYSLYS STNGQGVDIF SLPESAGHPR VKPLSGGDEV MLLVDNVGVV VDRFGQPVGS
1001: SLVFSTTPDY IAEVFPYVIV AGDSKVDVYR RRNAAHLQTI PVARTGQGVL IVAGDDDGID TELVVIATTY KVFCYRKVSA LEQIKASLRR KNYKEAISLL
1101: EEFESDGEIS KDMISFVHAQ LGFLLFFDLR FEDAVNHFLL SETMQPSEVF PFIMRDPNRW SDLVPRKRYW GLHPPPKPLE EVIDDGLVTV QQALFLKKAG
1201: VDTVVDEDFL SNPPSRADLL ELAIRNIIRY LCASRMKNLP SPEMEGVDTL LMYLYRALHL VDDMEKLASS QNSCIVDELE SLLDDSGHLR TLAFLYGSKG
1301: MCSKALSIWR VLARNYSAGL WKDLSENDSC GTLVTKRSGE EIAAVEAAKI LKALSDEDLV LEHLGWVADI DQDLAIAVLT SETRENQLSP EKVVASVDAE
1401: KVVIHQRYLQ WLIEGQGCDD PHYHTSYALS LAKSAIEAVD MESKYRGKDD SEIDSDAQFV YSVRESLQLF LQASDLYDPE DVLDVIAESE LWLEKAILYR
1501: KMGQENIVLQ ILALKLEDSE AAEQYCAEIG RDDAYIQLLG LYLDPQNGKE PMFTAAVRLL HNHGESLDPI QVLELASDTI LRTLRARVHH HRQGQIVHNL
1601: SRATNLDVRL TRLEERSRHV QLTDESICDS CRARLGTKLF AMYPNDSVVC YRCYRSQQGE SSSGHGRSMR KDVIFKQSWL VSR
0101: TPAPPVATPP TPKYPSSSAT PSTGDPYPFT NNPFFPTANS PPPPIPATET QPSSSGDGSL PTFPANISTL VAPTPRASGS RRFPVLQTLL LSLLSLCLIL
0201: LSALLSIHLV RRLRHRGGAA ASSPSAAQRR SASNHHQDDD NDDGDEEGRS LKPPPMPTSS TNPSTEFLYL GTLATPPPPG PQHPGTSSSL RPGSPELRPL
0301: PPLPRVGPPS GEFLSRSSAS DPSTVPPAAA ADASSSSLSP SSPSASSPTL GSSPVHFRPP TIPQPRGRAP NPSPPKRRPS PPKGAAEPVA AHGWNPFVPL
0401: PPRPAVASSD DGDSDQMMDL RKSRPLHSDK LKPGSLHMKD EVIQLYLNNS AAVAAPREVC LLGALRCHGI GMIVGALGVS KEQLKDALLE GNVHGLGVEA
0501: LQMLTQMVLS NEEELKIKYF KDDSLNRLCP VDVFLKAMLD VPFVFKRVDA MLYIASFYLE INRLRMSYAT LEGACQEMRS SRLFHKVLEA VVNFGNFMST
0601: NSGSPSSKGL EPNTVLKIAD VKGADGKAAL MQFIVQEIVK PEGYDVMQHG SGACKMSTNT LQCDAECRKH GLEVVAKLAA QLSNTKKAAS IDIKRLSQSV
0701: SELGMGLGKV HDVVRLNSMV TSVDSARRFH NSMSTFLRHA EEEILKLQSQ ESICLSSVKE MAEWFIGESV NDEAHMFRIF AGVKEFLAML DHICKEAGEL
0801: FGLVWFLVLA VDENDVMDPS TPEFLRLLPI GATLPVSAIV PLPSVARLLV LADGLLLLAD PLLSRPVRRL GSLRSVTAVA ARRVVLADPS SCSVAISVGK
0901: KLLRVDFTLH DADELDVQTR EIASVEGVKA LAWVDDSVFV ATATGYSLYS STNGQGVDIF SLPESAGHPR VKPLSGGDEV MLLVDNVGVV VDRFGQPVGS
1001: SLVFSTTPDY IAEVFPYVIV AGDSKVDVYR RRNAAHLQTI PVARTGQGVL IVAGDDDGID TELVVIATTY KVFCYRKVSA LEQIKASLRR KNYKEAISLL
1101: EEFESDGEIS KDMISFVHAQ LGFLLFFDLR FEDAVNHFLL SETMQPSEVF PFIMRDPNRW SDLVPRKRYW GLHPPPKPLE EVIDDGLVTV QQALFLKKAG
1201: VDTVVDEDFL SNPPSRADLL ELAIRNIIRY LCASRMKNLP SPEMEGVDTL LMYLYRALHL VDDMEKLASS QNSCIVDELE SLLDDSGHLR TLAFLYGSKG
1301: MCSKALSIWR VLARNYSAGL WKDLSENDSC GTLVTKRSGE EIAAVEAAKI LKALSDEDLV LEHLGWVADI DQDLAIAVLT SETRENQLSP EKVVASVDAE
1401: KVVIHQRYLQ WLIEGQGCDD PHYHTSYALS LAKSAIEAVD MESKYRGKDD SEIDSDAQFV YSVRESLQLF LQASDLYDPE DVLDVIAESE LWLEKAILYR
1501: KMGQENIVLQ ILALKLEDSE AAEQYCAEIG RDDAYIQLLG LYLDPQNGKE PMFTAAVRLL HNHGESLDPI QVLELASDTI LRTLRARVHH HRQGQIVHNL
1601: SRATNLDVRL TRLEERSRHV QLTDESICDS CRARLGTKLF AMYPNDSVVC YRCYRSQQGE SSSGHGRSMR KDVIFKQSWL VSR
001: MSKSRAVVEL TARFDLGGDD KIRALSLSPI SDSQTLVYLG TYSGSLILLS LDTLTNTVSR LASVSLSPSP VESIFVLGEE RGRVLALCNG YLFLLDSLLS
101: QPAKRLGGLL KGINVIAKRV RGRDSSSTDL LPSEISTDSS SSKKFLQLLG AGNLVSDVRG NDSRHERVQQ GHYVFAVAIG ERMLLIELQC AEKEGLSGSF
201: VVLKEILGIG GIKTLVWLDD YVIAGTVKGY SLISCVTGLS GVIFTLPDVS GPPLLKLLCK EWKVLLLVDN VGVVVDTNGQ PIGGSLVFRR RPDSVGELSF
301: YLVTVGDGKM EIHQKKSGAC VQSVSFGPQG CGPSLLAADE AGDGNLLVVT TLSKLIFYRR VPYEEQIKDL LRKKRYRETI SLVEELDSQG EISKDMLSFL
401: HAQIGYLLLF DLRFEEAVNQ FLKSEKMEPS EVFPFIMRDP NRWSLVVPRN RYWGLHPPPA PFEDVVDNGL MAIQRANFLR KAGMDTPVDE EFFSDPPSRA
501: DLLDSAIKNI TRYLEISREK GLTLPVREGI DTLLMLLYRA LNRVEDMENL ASSGNNCVVE ELETLLTESG HLRTLAFLYA TKGMGAKALA IWRLFTKNYS
601: SGLWQDSDDL VPYLHDNELI RLSGKEAAAA EAARILEEPC DPELALQHLS WIADVNPLFA IQVLTSDKRT EELSPEQVIQ AIDPKKVEII QRYFQWLIEE
701: RDYTDPQLHT SYALSLARSA LECVEVQNGI QEADVPNGSE AHDSNVGSIS LFEVDVRERL QAFLQSSDLY DPEEILELVE GSELWLEKAI LYRRIGKETL
801: VLQILALKLE DCAAAEQYCV EIGRPDAFMQ LLDMYLDPQN GKEPMFKAAV RLLHNHGESL DPLQVLDKLS PDMPLKLASD TILRMLRARV HHHRQGQIVH
901: NISRALDVDS RLARLEERSR HMQINDESLC DSCYARLGTK LFAMYPDDTI VCYKCYRRLG ESKSVTGRDF KRDVLIKPGW LVNR
101: QPAKRLGGLL KGINVIAKRV RGRDSSSTDL LPSEISTDSS SSKKFLQLLG AGNLVSDVRG NDSRHERVQQ GHYVFAVAIG ERMLLIELQC AEKEGLSGSF
201: VVLKEILGIG GIKTLVWLDD YVIAGTVKGY SLISCVTGLS GVIFTLPDVS GPPLLKLLCK EWKVLLLVDN VGVVVDTNGQ PIGGSLVFRR RPDSVGELSF
301: YLVTVGDGKM EIHQKKSGAC VQSVSFGPQG CGPSLLAADE AGDGNLLVVT TLSKLIFYRR VPYEEQIKDL LRKKRYRETI SLVEELDSQG EISKDMLSFL
401: HAQIGYLLLF DLRFEEAVNQ FLKSEKMEPS EVFPFIMRDP NRWSLVVPRN RYWGLHPPPA PFEDVVDNGL MAIQRANFLR KAGMDTPVDE EFFSDPPSRA
501: DLLDSAIKNI TRYLEISREK GLTLPVREGI DTLLMLLYRA LNRVEDMENL ASSGNNCVVE ELETLLTESG HLRTLAFLYA TKGMGAKALA IWRLFTKNYS
601: SGLWQDSDDL VPYLHDNELI RLSGKEAAAA EAARILEEPC DPELALQHLS WIADVNPLFA IQVLTSDKRT EELSPEQVIQ AIDPKKVEII QRYFQWLIEE
701: RDYTDPQLHT SYALSLARSA LECVEVQNGI QEADVPNGSE AHDSNVGSIS LFEVDVRERL QAFLQSSDLY DPEEILELVE GSELWLEKAI LYRRIGKETL
801: VLQILALKLE DCAAAEQYCV EIGRPDAFMQ LLDMYLDPQN GKEPMFKAAV RLLHNHGESL DPLQVLDKLS PDMPLKLASD TILRMLRARV HHHRQGQIVH
901: NISRALDVDS RLARLEERSR HMQINDESLC DSCYARLGTK LFAMYPDDTI VCYKCYRRLG ESKSVTGRDF KRDVLIKPGW LVNR
Arabidopsis Description
VPS3Vacuolar sorting protein 39 [Source:TAIR;Acc:AT1G22860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.