Factsheet for VIT_14s0108g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g00950.t01	Wine grape	endoplasmic reticulum	86.45	86.76
GSMUA_Achr6P04430_001	Banana	cytosol	29.06	56.0
CDY70125	Canola	cytosol	32.11	54.79
Bra035415.1-P	Field mustard	cytosol, plasma membrane, plastid	31.99	53.47
Bra024640.1-P	Field mustard	vacuole	46.28	50.94
Solyc05g006430.1.1	Tomato	endoplasmic reticulum	48.35	50.45
AT1G70140.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	46.52	50.13
CDY11614	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.5	50.13
PGSC0003DMT400058304	Potato	plasma membrane	48.84	50.0
AT1G24150.2	Thale cress	endoplasmic reticulum	32.11	49.62
CDY16239	Canola	vacuole	42.37	49.43
Bra016233.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.23	49.25
CDY38795	Canola	endoplasmic reticulum, golgi, plasma membrane	37.0	48.25
KRH74702	Soybean	endoplasmic reticulum	47.62	48.03
CDY14670	Canola	endoplasmic reticulum, golgi, vacuole	46.15	47.73
KRH69441	Soybean	golgi, plasma membrane	46.03	46.89
KRG99223	Soybean	golgi, vacuole	43.83	46.38
KRH45763	Soybean	endoplasmic reticulum, vacuole	44.44	46.08
VIT_17s0000g07570.t01	Wine grape	nucleus	47.5	45.82
CDY31597	Canola	mitochondrion	35.29	45.44
CDY55061	Canola	mitochondrion, nucleus	40.17	44.22
GSMUA_Achr8P22610_001	Banana	plasma membrane	40.54	43.8
CDY24501	Canola	mitochondrion, nucleus	39.93	40.42
CDY33614	Canola	mitochondrion, nucleus	37.85	40.26
Bra017889.1-P	Field mustard	nucleus	38.83	40.25
EES05554	Sorghum	plasma membrane	41.64	37.07
Zm00001d017983_P001	Maize	plasma membrane	41.15	36.59
TraesCS6D01G291400.1	Wheat	endoplasmic reticulum, plasma membrane	39.93	36.29
TraesCS6B01G342200.1	Wheat	endoplasmic reticulum, plasma membrane	39.8	36.18
AT1G59910.1	Thale cress	nucleus	41.03	36.17
TraesCS6A01G312000.2	Wheat	plastid	39.8	35.94
KXG39193	Sorghum	plastid	36.51	35.09
VIT_19s0014g05040.t01	Wine grape	cytosol, plastid	21.25	34.87
HORVU6Hr1G076870.4	Barley	plastid	39.8	34.79
VIT_07s0129g00220.t01	Wine grape	endoplasmic reticulum, extracellular	28.33	26.19
VIT_12s0059g02680.t01	Wine grape	golgi	24.42	24.97
VIT_00s0227g00200.t01	Wine grape	cytosol	4.64	24.84
VIT_05s0094g00920.t01	Wine grape	nucleus	26.74	23.55
VIT_14s0060g02330.t01	Wine grape	golgi, plasma membrane, vacuole	25.4	21.71
VIT_11s0016g00160.t01	Wine grape	cytosol	15.51	11.01
VIT_17s0000g06640.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	17.58	10.84
VIT_02s0033g01360.t01	Wine grape	cytosol, nucleus, plasma membrane	17.22	10.79
VIT_04s0008g06530.t01	Wine grape	cytosol, nucleus, plasma membrane	13.8	7.68

Protein Annotations

Gene3D:1.20.58.2220	EntrezGene:100249203	wikigene:100249203	MapMan:20.2.2.6.1	ProteinID:CCB47524	ProteinID:CCB47524.1
ncoils:Coil	UniProt:F6H5Q3	InterPro:FH2_Formin	EMBL:FN595239	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR015425	EntrezGene:LOC100249203	wikigene:LOC100249203	PFAM:PF02181	PFscan:PS51444
PANTHER:PTHR23213	PANTHER:PTHR23213:SF239	SMART:SM00498	SUPFAM:SSF101447	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00015C9D95	ArrayExpress:VIT_14s0108g00290	EnsemblPlantsGene:VIT_14s0108g00290	EnsemblPlants:VIT_14s0108g00290.t01	unigene:Vvi.13412	RefSeq:XP_002277455
RefSeq:XP_002277455.1	SEG:seg	:	:	:	:

Description

Formin-like protein [Source:UniProtKB/TrEMBL;Acc:F6H5Q3]

Coordinates

chr14:-:29069039..29072101

Molecular Weight (calculated)

89342.3 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.420

Length

819 amino acids

Sequence
(BLAST)

001: MAAVIQPCPL ISLFFVSLFS ILHLSSCQPN SPRNIETFYP FRPPPNPTNP IPNPRISQLS IPSSKSSSSY AVAKAVAVTA ATTIVVSGLF FILFQKYTVA
101: RGRSQKGKND PRGGGENVVS HIEFSRFNGN LNGLIVDENG LDVLYWKKLE GDYRKNSFPK QALHNLKHEE KRMSRNGDGR AKSEPIQEIP LLRGKSSTSY
201: DEVQEEVENL NWFSAPPPSS QSSEISLEAV GKTESTIQSS TSLPPPPPIL AIPQKPSATP PPSPPIPAKI NPIPPPPPSP SPPIPAKINP IPPPPPSPPI
301: PAKINPIPPP PPSPKAGGFT SSSKEASSVT KGMPNGSKLG ESSSGYSKAG TGNGRVALKP LHWDKVNTNA DHSMVWHKIN GGSFSFDGDL MDALFGNVAA
401: NGRSPQINHN NPNGASSIQS AQIFILDSRK SQNTAIVLRS LAISRKEILN ALIKGQDLNA DALEKLTKIA PTKEEESQIL AFEGDPTRLA DAESFLYHIL
501: KAVPSAFIRL SAMFFRSNYD SEILHLRECL QTLELGCKEL RTRGLFLKLL EAILEAGNRM NAGTSRGNAQ AFNLAALQKL SDVKSTDGKT TLLHFVVEEV
601: VRSEGKRCVL NRNRSLSHSS NSSLYSENSA SREDREKEYI MIGLPVVGSL SAEFSNVKKV AEMDYNAFGG VCSTLTAHST EIKQFVAPFA NSDGGFLRKM
701: KSFLEAAGEE LREVREEQTR VMELLRRTTE YYQPRSSKNK EASPLQLFII VKDFLGMVDQ VCVDIARNLQ RRKTTTASLG PSSTKSPPSR IPVKFPNLPP
801: NFMPDKSRNS SSSDSEDEF

Best Arabidopsis Sequence Match ( AT1G59910.1 )
(BLAST)

001: MSFLFRKNGS SSRRKIKEKL RGRHSDRGGK REEDERYGGS GSDLPPPPSP WGFLFPEDFV RIDGNLKAVI VDDEGLDVIY WKKLLELENS GKIRKNPKPR
101: RRGDKSGDGF RRTGADQDDN DDGDDEVGDE SIEEAFSFHV KKSQSASSSG GEIRDQSNNG GGGGGGGGGG GRYYTSSSAS PSRPSSSSAS AASPSRTSYA
201: TSAGSDYGGG GGGKQSQSKF QAPGGGSFPS SPSQIHSGGG RSPPLPLPPG QFTAGNASFP SSTQPPPGQY MAGNASFPSS TPPPPGQYMA GNAPFSSSTP
301: LPPGQYPAVN AQLSTSAPSV PLPPGQYTAV NAPFSTSTQP VSLPPGQYMP GNAALSASTP LTPGQFTTAN APPAPPGPAN QTSPPPPPPP SAAAPPPPPP
401: PKKGPAAPPP PPPPGKKGAG PPPPPPMSKK GPPKPPGNPK GPTKSGETSL AVGKTEDPTQ PKLKPLHWDK MNPDASRSMV WHKIDGGSFN FDGDLMEALF
501: GYVARKPSES NSVPQNQTVS NSVPHNQTYI LDPRKSQNKA IVLKSLGMTK EEIIDLLTEG HDAESDTLEK LAGIAPTPEE QTEIIDFDGE PMTLAYADSL
601: LFHILKAVPS AFNRFNVMLF KINYGSEVAQ QKGSLLTLES ACNELRARGL FMKLLEAILK AGNRMNAGTA RGNAQAFNLT ALRKLSDVKS VDAKTTLLHF
701: VVEEVVRSEG KRAAMNKNMM SSDNGSGENA DMSREEQEIE FIKMGLPIIG GLSSEFTNVK KAAGIDYDSF VATTLALGTR VKETKRLLDQ SKGKEDGCLT
801: KLRSFFESAE EELKVITEEQ LRIMELVKKT TNYYQAGALK ERNLFQLFVI IRDFLGMVDN ACSEIARNQR KQQQQRPATT VAGASSSPAE TPSVAAAPQR
901: NAVRFPILPP NFMSESSRYS SSSDSDSES

Arabidopsis Description

FH7Formin-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.