Factsheet for VIT_02s0033g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31810.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075650.2.1	Tomato	cytosol	25.86	83.25
PGSC0003DMT400079306	Potato	cytosol	25.63	83.13
Os10t0119300-01	Rice	mitochondrion	25.02	78.42
Solyc08g075670.1.1	Tomato	cytosol	28.84	75.4
GSMUA_Achr5P13600_001	Banana	extracellular	16.83	74.07
Bra038438.1-P	Field mustard	extracellular	16.22	69.97
TraesCS2B01G406800.1	Wheat	cytosol	49.81	69.85
HORVU2Hr1G092520.9	Barley	cytosol	44.76	69.15
KRH62678	Soybean	cytosol	63.43	68.74
CDY49153	Canola	cytosol	54.17	67.56
KRH39699	Soybean	cytosol	63.27	67.46
Bra023204.1-P	Field mustard	cytosol	59.68	67.07
CDY12361	Canola	cytosol	57.0	66.4
AT1G31810.1	Thale cress	cytosol	62.2	66.1
KXG25260	Sorghum	cytosol	58.91	63.64
CDY27130	Canola	cytosol, mitochondrion	19.05	63.36
CDY12294	Canola	cytosol	58.07	62.26
GSMUA_Achr5P13590_001	Banana	cytosol	40.32	57.28
VIT_11s0016g00160.t01	Wine grape	cytosol	41.55	47.05
VIT_17s0000g06640.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	44.68	43.94
VIT_04s0008g06530.t01	Wine grape	cytosol, nucleus, plasma membrane	41.7	37.02
KRH15653	Soybean	cytosol	31.91	26.34
VIT_19s0014g05040.t01	Wine grape	cytosol, plastid	8.03	21.04
VIT_07s0129g00220.t01	Wine grape	endoplasmic reticulum, extracellular	13.85	20.43
VIT_05s0094g00920.t01	Wine grape	nucleus	13.24	18.6
VIT_01s0026g00950.t01	Wine grape	endoplasmic reticulum	11.48	18.38
VIT_12s0059g02680.t01	Wine grape	golgi	10.71	17.48
VIT_14s0060g02330.t01	Wine grape	golgi, plasma membrane, vacuole	12.62	17.22
VIT_14s0108g00290.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	10.79	17.22
VIT_17s0000g07570.t01	Wine grape	nucleus	10.94	16.84
VIT_00s0227g00200.t01	Wine grape	cytosol	1.68	14.38

Protein Annotations

Gene3D:1.20.58.2220	EntrezGene:100264917	wikigene:100264917	Gene3D:2.60.40.1110	MapMan:20.2.2.6.2	Gene3D:3.90.190.10
ProteinID:CCB60368	ProteinID:CCB60368.1	ncoils:Coil	UniProt:F6I0A2	InterPro:FH2_Formin	EMBL:FN596505
GO:GO:0003674	GO:GO:0005198	GO:GO:0005199	InterPro:IPR014020	InterPro:IPR015425	InterPro:IPR029021
InterPro:IPR029023	EntrezGene:LOC100264917	wikigene:LOC100264917	PFAM:PF02181	PFAM:PF10409	PRINTS:PR01218
PFscan:PS51181	PFscan:PS51182	PFscan:PS51444	PANTHER:PTHR23213	PANTHER:PTHR23213:SF334	InterPro:Pistil_extensin
InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00498	SMART:SM01326	SUPFAM:SSF101447	SUPFAM:SSF49562	SUPFAM:SSF52799
InterPro:Tensin_C2-dom	InterPro:Tensin_phosphatase	UniParc:UPI000210971C	ArrayExpress:VIT_02s0033g01360	EnsemblPlantsGene:VIT_02s0033g01360	EnsemblPlants:VIT_02s0033g01360.t01
RefSeq:XP_002263093	RefSeq:XP_002263093.1	SEG:seg	:	:	:

Description

Formin-like protein [Source:UniProtKB/TrEMBL;Acc:F6I0A2]

Coordinates

chr2:+:16854247..16878858

Molecular Weight (calculated)

141520.0 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.486

Length

1307 amino acids

Sequence
(BLAST)

0001: MSLLSRFFYR RPPDGLLEFV DRVYVFDSCF STEVLPNGMY QIYLHEIINE LHEQYPDSSF LAFNFREGEK RSQFAEILCE YDVTVLDYPR QYEGCPLLPL
0101: SLIQHFLRVC GSWLSLGSQQ NIILLHCERG GWPLLALLLA SFLIFRKLHS GERKTLEIVH REAPKGFLQL LSPLNPFPSQ LRYLQYVARR NISPEWPPPE
0201: RALSLDCVFL RAIPSFDSQN GCRPIIRIFG RNLHSKGGLS TQMLFSMSKK RKTIRHYCQA DCDVIKIDIQ CMVQGDVVLE CVHLDVDSER EVMMFRVMFN
0301: TAFIRSNILM LNCENLDILW DSKERYPKGF RAEVLFGDVE SISPSRAPTE ILNGEEQGGL PIEAFSRVQE LFSGVEWVDN SDDATLWLLK QLSVLNDAKE
0401: LSRFPNKVSS RTSPADSEEE NNASSIADSL DFMDSEKVNS LTNTTEPADN FLDDPSFQDS ASDEATDIIP SPPAASNQAS IETAMSSVHQ QSSGPIEGSP
0501: PTLPPPPPPL PPFAISGTIA PQAASLPSSA PPPLPPPLPG SALSMSQSYA SNRNLLPPST STPPPPPPPP ISSNKAPSPP PPPPPPPLPN VSNGNPLMPP
0601: TPASRGPPPP PPPPPPLPGV SNSDTSMLAG RGPSPPPPPP PPPPTSISSK GPPPPPPPPD FSSSSSNKPT LPPPPPPPPA PPLPMFSSSS STSRSSSSHG
0701: VPPPHPPPPP PSLGCNPSNA TQPPLPPPPP PLPPGSARQA SCPPAPPPPP PPPPAPKPPG APPPPPPPPP TTKPLGAHPP PPPPPPPPPA PKPPGAPPPP
0801: PKPPSAPPPP PPKPPGAPPP PPPKLPGAPA PPPSHVTVPG PPPPPGAKGT NAPPPPPTGR GRASSGSASH GRGRGSTGFT TAPKKASLRP LHWVKVTRAV
0901: QGSLWADSQK QENQSRAPEI DISELESLFS AVSTSDGKGT EKGGGRRGSN INKPEKVQLV DLRRAYNCEI MLTKIKIPLP DMLNAILALD SSTLDIDQVE
1001: NLIKFCPTKE EMELLKNYPG DKAMLGKCEQ FFLELMKVPR VESKLRVFSF KITFSSQVKD LRNNLNTIND AAREVKESVK LRQIMQTILT LGNALNQGTA
1101: RGAAIGFKLD SLLKLADTRA RNNKMTLMHY LCKLLSEKLS ELLDFDKDLV HLEAASKIQL KSLAEEMQAV SKGLEKVEQE LTASVNDGAI SAGFQKVLKN
1201: FLDTAEAEVR SLISLYSEVG RNADSLSQYF GEDPARCPFE QVTQILVVFI KTFNKSRDDN EKQADAEKKK LEKEAMKERA AGNLSARKEG VDIDRTKLNF
1301: QHQRHNP

Best Arabidopsis Sequence Match ( AT1G31810.2 )
(BLAST)

0001: MSLLSRFFYK RPPDGLLEFA DRVYVFDSCF CTEVLADSLY QIFLHEVIND LHEEFPESSF LAFNFREGEK KSVFAETLCE YDVTVLEYPR QYEGCPMLPL
0101: SLIQHFLRVC ESWLARGNRQ DVILLHCERG GWPLLAFILA SFLIFRKVHS GERRTLEIVH REAPKGLLQL LSPLNPFPSQ LRYLQYVARR NINSEWPPPE
0201: RALSLDCVII RGIPNFDSQH GCRPIIRIFG RNYSSKSGLS TEMVYSMSDK KKPLRHYRQA ECDVIKIDIQ CWVQGDVVLE CVHMDLDPER EVMMFRVMFN
0301: TAFIRSNILM LNSDNLDILW EAKDHYPKGF RAEVLFGEVE NASPQKVPTP IVNGDETGGL PIEAFSRVQE LFSGVDLAEN GDDAALWLLK QLAAINDAKE
0401: FTRFRHKGSF YFNSPDSEEE TNTSSAADSS DEGFEAIQRP RIHIPFDNDD TDDITLSVAH ESSEEPHEFS HHHHHEIPAK DSVDNPLNLP SDPPSSGDHV
0501: TLLPPPPPPP PPPLFTSTTS FSPSQPPPPP PPPPLFMSTT SFSPSQPPPP PPPPPLFTST TSFSPSQPPP PPPLPSFSNR DPLTTLHQPI NKTPPPPPPP
0601: PPPLPSRSIP PPLAQPPPPR PPPPPPPPPS SRSIPSPSAP PPPPPPPPSF GSTGNKRQAQ PPPPPPPPPP TRIPAAKCAP PPPPPPPTSH SGSIRVGPPS
0701: TPPPPPPPPP KANISNAPKP PAPPPLPPSS TRLGAPPPPP PPPLSKTPAP PPPPLSKTPV PPPPPGLGRG TSSGPPPLGA KGSNAPPPPP PAGRGRASLG
0801: LGRGRGVSVP TAAPKKTALK PLHWSKVTRA AKGSLWADTQ KQENQPRAPE IDISELESLF SAVSDTTAKK STGRRGSSIS KPEKVQLVDL RRANNCEIML
0901: TKIKIPLPDM LSAVLALDSL ALDIDQVENL IKFCPTKEEM ELLRNYTGDK EMLGKCEQFF MELMKVPRIE AKLRVFGFKI TFASQVEELK SCLNTINAAT
1001: KEVKESAKLR QIMQTILTLG NALNQGTARG SAVGFKLDSL LKLSDTRARN NKMTLMHYLC KLVGEKMPEL LDFANDLVHL EAASKIELKT LAEEMQAATK
1101: GLEKVEQELM ASENDGAISL GFRKVLKEFL DMADEEVKTL ASLYSEVGRN ADSLSHYFGE DPARCPFEQV TKILTLFMKT FIKSREENEK QAEAEKKKLE
1201: KEAIKEKSAT KKDGVDNDND LIQQIHRHRT

Arabidopsis Description

FH14Formin-like protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.