Factsheet for PGSC0003DMT400079306

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31810.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075650.2.1	Tomato	cytosol	99.75	99.01
GSMUA_Achr5P13600_001	Banana	extracellular	53.35	72.39
Os10t0119300-01	Rice	mitochondrion	73.95	71.46
Bra038438.1-P	Field mustard	extracellular	52.36	69.64
PGSC0003DMT400063143	Potato	cytosol	50.62	64.97
PGSC0003DMT400029052	Potato	cytosol	44.17	64.49
CDY27130	Canola	cytosol, mitochondrion	58.31	59.8
PGSC0003DMT400020452	Potato	cytosol	23.08	56.36
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	15.63	51.22
TraesCS2B01G406800.1	Wheat	cytosol	72.46	31.33
HORVU2Hr1G092520.9	Barley	cytosol	64.27	30.61
CDY49153	Canola	cytosol	72.46	27.86
KRH62678	Soybean	cytosol	79.16	26.45
CDY12361	Canola	cytosol	73.45	26.38
KRH39699	Soybean	cytosol	78.66	25.86
VIT_02s0033g01360.t01	Wine grape	cytosol, nucleus, plasma membrane	83.13	25.63
Bra023204.1-P	Field mustard	cytosol	72.21	25.02
AT1G31810.1	Thale cress	cytosol	76.18	24.96
KXG25260	Sorghum	cytosol	73.95	24.63
PGSC0003DMT400083315	Potato	cytosol	11.17	24.19
CDY12294	Canola	cytosol	72.46	23.95
PGSC0003DMT400067386	Potato	cytosol	16.87	19.6
PGSC0003DMT400039073	Potato	cytosol	12.9	19.26
PGSC0003DMT400056393	Potato	cytosol	20.84	17.5
PGSC0003DMT400036575	Potato	mitochondrion	11.91	16.78
PGSC0003DMT400031544	Potato	cytosol	18.61	16.52
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	21.09	11.26
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	23.33	10.79
PGSC0003DMT400063186	Potato	plastid	20.1	10.73
PGSC0003DMT400058304	Potato	plasma membrane	21.09	10.62
PGSC0003DMT400038519	Potato	endoplasmic reticulum	22.08	10.1
PGSC0003DMT400055250	Potato	vacuole	21.84	9.93
PGSC0003DMT400013717	Potato	plastid	20.84	9.76
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	22.58	9.64
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	21.34	9.56
GSMUA_Achr5P13590_001	Banana	cytosol	20.35	8.91
PGSC0003DMT400036332	Potato	plasma membrane	20.35	8.88
KRH15653	Soybean	cytosol	31.27	7.96
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	8.44	4.35
Solyc08g075670.1.1	Tomato	cytosol	3.23	2.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400079306	EnsemblPlantsGene:PGSC0003DMG402030866	Gene3D:1.20.58.2220	InterPro:FH2_Formin	InterPro:IPR015425	ncoils:Coil
PANTHER:PTHR23213	PANTHER:PTHR23213:SF334	PFAM:PF02181	PFscan:PS51444	PGSC:PGSC0003DMG402030866	SEG:seg
SMART:SM00498	SUPFAM:SSF101447	UniParc:UPI00029518DB	UniProt:M1D1L0	MapMan:20.2.2.6.2	:

Description

Formin 14 [Source:PGSC_GENE;Acc:PGSC0003DMG402030866]

Coordinates

chr8:-:47994364..48003428

Molecular Weight (calculated)

44938.1 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.400

Length

403 amino acids

Sequence
(BLAST)

001: MQGSLWADTQ NKENTSRAPE IDITELENLF SVASATDGTS KGGGRRGSKI NKPEKIDLRR AYNCEIMLTK IKIPLPDMLN AILALDSSAL DIDQVENLIK
101: FCPTKEEMET LRNYNGDKGM LGKCEQFFLE LMKVPRVESK LRVFSFTITF SNQVKDLRSN LSTINDATRE VKESAKLRQI MQTILTLGNA LNQGTARGSA
201: VGFKLDSLLK LSDTRARNNK MTLMHYLCKL LAEKMPELLD FDKDLLHLEA ASKIQLKSLA EEMQAVSKGL EKVEQELTAS DNDGTISSGF QKVLKNFLDT
301: AEAEVKSLTT LYIEVGRSAD SLSLYFGEDP ARCPFEQVTQ ILVVFMKMFK KSRDENEQAA DAEKKKLEKE ALKEQVAASS SGKKGVGDGD RVKLNFLNQL
401: HAV

Best Arabidopsis Sequence Match ( AT1G31810.2 )
(BLAST)

0001: MSLLSRFFYK RPPDGLLEFA DRVYVFDSCF CTEVLADSLY QIFLHEVIND LHEEFPESSF LAFNFREGEK KSVFAETLCE YDVTVLEYPR QYEGCPMLPL
0101: SLIQHFLRVC ESWLARGNRQ DVILLHCERG GWPLLAFILA SFLIFRKVHS GERRTLEIVH REAPKGLLQL LSPLNPFPSQ LRYLQYVARR NINSEWPPPE
0201: RALSLDCVII RGIPNFDSQH GCRPIIRIFG RNYSSKSGLS TEMVYSMSDK KKPLRHYRQA ECDVIKIDIQ CWVQGDVVLE CVHMDLDPER EVMMFRVMFN
0301: TAFIRSNILM LNSDNLDILW EAKDHYPKGF RAEVLFGEVE NASPQKVPTP IVNGDETGGL PIEAFSRVQE LFSGVDLAEN GDDAALWLLK QLAAINDAKE
0401: FTRFRHKGSF YFNSPDSEEE TNTSSAADSS DEGFEAIQRP RIHIPFDNDD TDDITLSVAH ESSEEPHEFS HHHHHEIPAK DSVDNPLNLP SDPPSSGDHV
0501: TLLPPPPPPP PPPLFTSTTS FSPSQPPPPP PPPPLFMSTT SFSPSQPPPP PPPPPLFTST TSFSPSQPPP PPPLPSFSNR DPLTTLHQPI NKTPPPPPPP
0601: PPPLPSRSIP PPLAQPPPPR PPPPPPPPPS SRSIPSPSAP PPPPPPPPSF GSTGNKRQAQ PPPPPPPPPP TRIPAAKCAP PPPPPPPTSH SGSIRVGPPS
0701: TPPPPPPPPP KANISNAPKP PAPPPLPPSS TRLGAPPPPP PPPLSKTPAP PPPPLSKTPV PPPPPGLGRG TSSGPPPLGA KGSNAPPPPP PAGRGRASLG
0801: LGRGRGVSVP TAAPKKTALK PLHWSKVTRA AKGSLWADTQ KQENQPRAPE IDISELESLF SAVSDTTAKK STGRRGSSIS KPEKVQLVDL RRANNCEIML
0901: TKIKIPLPDM LSAVLALDSL ALDIDQVENL IKFCPTKEEM ELLRNYTGDK EMLGKCEQFF MELMKVPRIE AKLRVFGFKI TFASQVEELK SCLNTINAAT
1001: KEVKESAKLR QIMQTILTLG NALNQGTARG SAVGFKLDSL LKLSDTRARN NKMTLMHYLC KLVGEKMPEL LDFANDLVHL EAASKIELKT LAEEMQAATK
1101: GLEKVEQELM ASENDGAISL GFRKVLKEFL DMADEEVKTL ASLYSEVGRN ADSLSHYFGE DPARCPFEQV TKILTLFMKT FIKSREENEK QAEAEKKKLE
1201: KEAIKEKSAT KKDGVDNDND LIQQIHRHRT

Arabidopsis Description

FH14Formin-like protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.