Factsheet for PGSC0003DMT400083315

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039073	Potato	cytosol	82.26	56.67
PGSC0003DMT400036575	Potato	mitochondrion	65.05	42.31
PGSC0003DMT400067386	Potato	cytosol	72.58	38.9
PGSC0003DMT400031544	Potato	cytosol	87.63	35.9
VIT_19s0014g05040.t01	Wine grape	cytosol, plastid	82.8	30.86
GSMUA_Achr8P07370_001	Banana	endoplasmic reticulum, golgi	62.9	23.54
PGSC0003DMT400056393	Potato	cytosol	56.99	22.08
GSMUA_Achr3P23040_001	Banana	cytosol, mitochondrion, plastid	68.82	19.72
Solyc10g006540.2.1	Tomato	extracellular	97.85	19.51
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	83.87	17.91
GSMUA_Achr2P14090_001	Banana	mitochondrion	62.9	17.59
CDY43811	Canola	golgi	73.12	15.94
Bra029012.1-P	Field mustard	plasma membrane	73.12	15.83
CDY43029	Canola	plasma membrane	73.12	15.76
KRH27118	Soybean	plasma membrane	74.73	15.39
CDY18346	Canola	plasma membrane	72.04	15.37
PGSC0003DMT400063143	Potato	cytosol	25.81	15.29
Bra002969.1-P	Field mustard	plasma membrane	72.04	15.28
KRH22219	Soybean	endoplasmic reticulum, golgi, plasma membrane	74.19	15.21
CDY42470	Canola	plasma membrane	69.89	15.13
AT5G54650.1	Thale cress	extracellular, mitochondrion, nucleus, plasma membrane	73.12	15.11
HORVU0Hr1G015390.6	Barley	cytosol, plasma membrane, plastid	66.13	14.71
PGSC0003DMT400036332	Potato	plasma membrane	72.58	14.63
KRH25896	Soybean	plasma membrane	75.27	14.39
TraesCS6B01G163200.1	Wheat	plasma membrane	65.05	14.34
TraesCS6A01G135200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	65.05	14.24
TraesCS6D01G124300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	65.05	14.24
EES04559	Sorghum	plasma membrane	65.05	14.17
PGSC0003DMT400029052	Potato	cytosol	20.97	14.13
Os04t0100300-00	Rice	plasma membrane	62.37	14.09
Os02t0161100-01	Rice	golgi	66.13	13.96
KRH55607	Soybean	plasma membrane	73.12	13.91
EER99497	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	67.74	13.89
Os07t0545500-01	Rice	plasma membrane	67.2	13.46
Zm00001d004557_P002	Maize	golgi, plasma membrane, vacuole	67.74	13.32
TraesCS2A01G214500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.2	13.21
EES10325	Sorghum	golgi	68.28	13.17
Zm00001d006549_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	64.52	13.02
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	52.69	12.98
TraesCS2B01G239500.1	Wheat	plasma membrane	65.59	12.96
TraesCS2D01G220300.1	Wheat	plasma membrane	65.59	12.75
TraesCS2A01G044700.1	Wheat	extracellular, plasma membrane	70.97	12.72
Zm00001d024947_P005	Maize	plasma membrane	68.28	12.66
TraesCS2B01G056800.1	Wheat	extracellular, plasma membrane	70.97	12.6
TraesCS2D01G043300.1	Wheat	extracellular, plasma membrane	68.82	12.48
PGSC0003DMT400013717	Potato	plastid	55.91	12.08
HORVU2Hr1G043830.5	Barley	cytosol, nucleus, plastid	66.13	11.96
Zm00001d015326_P003	Maize	mitochondrion, plastid	64.52	11.86
PGSC0003DMT400038519	Potato	endoplasmic reticulum	55.91	11.8
PGSC0003DMT400055250	Potato	vacuole	55.38	11.63
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	55.91	11.56
PGSC0003DMT400079306	Potato	cytosol	24.19	11.17
PGSC0003DMT400058304	Potato	plasma membrane	47.85	11.12
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	55.38	10.91
PGSC0003DMT400063186	Potato	plastid	42.47	10.46
PGSC0003DMT400020452	Potato	cytosol	3.76	4.24
HORVU2Hr1G006690.1	Barley	peroxisome	19.89	4.24
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	4.3	1.02
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400083315	EnsemblPlantsGene:PGSC0003DMG400033184	Gene3D:1.20.58.2220	InterPro:FH2_Formin	InterPro:IPR015425	PANTHER:PTHR23213
PANTHER:PTHR23213:SF195	PFAM:PF02181	PFscan:PS51444	PGSC:PGSC0003DMG400033184	SUPFAM:SSF101447	UniParc:UPI000295347B
UniProt:M1D6W0	MapMan:20.2.2.6.1	:	:	:	:

Description

Actin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033184]

Coordinates

chr00:+:40121090..40123152

Molecular Weight (calculated)

20700.9 Da

IEP (calculated)

5.888

GRAVY (calculated)

-0.269

Length

186 amino acids

Sequence
(BLAST)

001: MAPTADKELK LRLYNGDLSR LGPAERFLKV LVDIPFAFKR LESLLFMCSL EEEASMAKES FATLEAACTE LRKSRLFHKL LEAVLKTGNR MNDGTFRGGA
101: QAFKLDTLLK LSDVKGIDGK TTLLHFVVQE IIRSEGIRAA RARDRGSVSS IKSDDLPEDQ PQDAEEYYRS TGLQVVSGLS SEIENV

Best Arabidopsis Sequence Match ( AT3G05470.1 )
(BLAST)

001: MVYFRQIFLM IIVVSLHCCK VRFFCIVANA KELDDWKVLT VENGERYRTH VGRYAGEEGG EKIKLRVLEK FRALLDLIKP STSRRRNLAE SASFSPWPAP
101: SPSPFPNGGP IESPAYPPAP PRPIPPHLRR PLPQRTHPLE QPEIQRRKHE KGGTFKKILV PVVASTASAI GFVVCVVGVF CLCARRKRKM NGKTLSFKRK
201: KGKSQSSTRK VSVNPTLDFL YLNSLGVDLE RQNSVSVKEI RETEKDLNGI NGGLLEEEVK RSIETEISHD WDNASSYSTK EIVSVHENDE EQTVNSVSVP
301: VVVINDSSDD DESFHSVGGG SQYSNPRLSN ASSASGSVNV GSSQRFSEHK LDIPECSRSD FGISVSAPPP PPPPPPPLPQ FSNKRIHTLS SPETANLQTL
401: SSQLCEKLCA SSSKTSFPIN VPNSQPRPPP PPPPPQQLQV AGINKTPPPP LSLDFSERRP LGKDGAPLPK LKPLHWDKVR ATPDRTMVWD KLRTSSFELD
501: EEMIESLFGY TMQSSTKNEE GKSKTPSPGK HLLEPKRLQN FTILLKALNA TADQICSALG KGEGLCLQQL EALVKMVPTK EEELKLRSYK GAVDELGSAE
601: KFLRALVGVP FAFQRAEAML YRETFEDEVV HLRNSFSMLE EACKELKSSR LFLKLLEAVL KTGNRMNVGT IRGGAKAFKL DALLKLSDVK GTDGKTTLLH
701: FVVQEISRSE GIRVSDSIMG RIMNQRSNKN RTPEEKEEDY RRMGLDLVSG LNTELRNVKK TATIDLEGLV TSVSNLRDGL GQLSCLASEK LKGDEENRAF
801: VSSMSSFLRY GEKSLEELRE DEKRIMERVG EIAEYFHGDV RGDEKNPLRI FVIVRDFLGM LDHVCRELRC VRVPNSPSPL APFR

Arabidopsis Description

FH11Formin-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VCE3]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.