Factsheet for PGSC0003DMT400038519

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044060.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	91.94	93.43
GSMUA_Achr7P26240_001	Banana	cytosol	26.11	69.49
PGSC0003DMT400055250	Potato	vacuole	63.9	63.54
CDY37849	Canola	endoplasmic reticulum	37.0	62.1
VIT_07s0129g00220.t01	Wine grape	endoplasmic reticulum, extracellular	61.63	61.29
GSMUA_Achr4P07090_001	Banana	cytosol	30.42	58.26
CDY08720	Canola	mitochondrion	47.67	57.77
KRH28364	Soybean	vacuole	58.23	57.32
KRH77115	Soybean	endoplasmic reticulum, golgi, vacuole	57.66	57.14
KRH04437	Soybean	plastid, vacuole	56.87	56.67
KRH58088	Soybean	endoplasmic reticulum, golgi, vacuole	56.53	56.02
PGSC0003DMT400083315	Potato	cytosol	11.8	55.91
CDY43578	Canola	endoplasmic reticulum, extracellular	53.01	55.6
PGSC0003DMT400056393	Potato	cytosol	29.51	54.17
HORVU4Hr1G069940.1	Barley	plastid	35.41	53.89
Bra024447.1-P	Field mustard	extracellular, plasma membrane, vacuole	54.71	53.73
AT5G67470.1	Thale cress	extracellular, plasma membrane, vacuole	54.82	53.73
CDY36494	Canola	endoplasmic reticulum, vacuole	54.6	53.33
Os03t0204100-01	Rice	plasma membrane	45.86	45.29
Bra031838.1-P	Field mustard	cytosol	22.59	45.23
TraesCS4A01G047000.1	Wheat	extracellular, plasma membrane, vacuole	44.72	44.27
Zm00001d028089_P001	Maize	plasma membrane	44.27	44.22
TraesCS4D01G257700.1	Wheat	plasma membrane	44.27	44.02
TraesCS4B01G257800.1	Wheat	plasma membrane	44.27	43.67
HORVU4Hr1G069930.2	Barley	golgi, mitochondrion, plasma membrane	44.38	43.59
PGSC0003DMT400067386	Potato	cytosol	17.14	43.52
PGSC0003DMT400036575	Potato	mitochondrion	14.07	43.36
Zm00001d048142_P001	Maize	plasma membrane	42.0	42.97
KXG39923	Sorghum	mitochondrion	45.52	42.61
Zm00001d013926_P001	Maize	extracellular, plasma membrane	40.18	42.4
HORVU1Hr1G077850.2	Barley	mitochondrion	34.28	42.24
TraesCS1A01G327400.1	Wheat	plasma membrane	37.68	41.29
PGSC0003DMT400039073	Potato	cytosol	12.6	41.11
Os07t0588200-01	Rice	golgi, plasma membrane, vacuole	35.98	40.96
Zm00001d032545_P001	Maize	plasma membrane	39.73	40.75
TraesCS2B01G213200.1	Wheat	plasma membrane	36.21	40.74
KXG38231	Sorghum	plastid	41.66	40.69
Zm00001d021985_P001	Maize	plasma membrane	36.55	40.61
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	34.62	40.4
EER97466	Sorghum	plasma membrane	36.32	40.3
TraesCS2A01G193700.1	Wheat	golgi	35.87	40.25
PGSC0003DMT400013717	Potato	plastid	38.82	39.72
TraesCS1B01G340800.1	Wheat	mitochondrion	37.57	39.69
Os10t0347800-00	Rice	cytosol, nucleus, plastid	38.37	39.53
HORVU2Hr1G035230.1	Barley	golgi, plasma membrane, plastid	35.3	39.52
TraesCS1D01G329400.1	Wheat	plastid	37.0	39.09
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	38.59	36.02
PGSC0003DMT400031544	Potato	cytosol	17.82	34.58
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	31.9	31.22
PGSC0003DMT400058304	Potato	plasma membrane	26.22	28.88
PGSC0003DMT400063186	Potato	plastid	23.61	27.55
PGSC0003DMT400036332	Potato	plasma membrane	28.6	27.3
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	26.9	27.21
PGSC0003DMT400063143	Potato	cytosol	8.51	23.89
PGSC0003DMT400029052	Potato	cytosol	7.15	22.83
PGSC0003DMT400079306	Potato	cytosol	10.1	22.08
PGSC0003DMT400020452	Potato	cytosol	3.18	16.97
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	1.93	13.82
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	6.92	7.8

Protein Annotations

Gene3D:1.20.58.2220	EntrezGene:102588979	MapMan:20.2.2.6.1	ncoils:Coil	InterPro:FH2_Formin	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR015425	UniProt:M1B707	PFAM:PF02181	EnsemblPlantsGene:PGSC0003DMG400014869
PGSC:PGSC0003DMG400014869	EnsemblPlants:PGSC0003DMT400038519	PFscan:PS51444	PANTHER:PTHR23213	PANTHER:PTHR23213:SF261	SMART:SM00498
SUPFAM:SSF101447	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295EDE9	RefSeq:XP_006343211.1	SEG:seg

Description

Formin 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400014869]

Coordinates

chr3:-:6979772..6983541

Molecular Weight (calculated)

97842.7 Da

IEP (calculated)

9.765

GRAVY (calculated)

-0.546

Length

881 amino acids

Sequence
(BLAST)

001: MRAHPIYNFL LVLIVITASS ITAAAEHTQI QHLIDINPLT RRILHQPLFP STSSSPPPPP QINSEPIFPT PDHPFFPEVP TVQTPDQPQQ QIQPNGTPIS
101: RNNSIAPQPT NPTKKFAIAV SVGIVTLGML SALGFYIYKH KTKHPDETQK LVSNHNTNSF QEESRMPPSN FLYIGTVEPS SSATAAAAAS QTQINHSIVA
201: NNTSPYRKLS PAKKSDRYRP SPELQPLPSL RNNPTFFTPP AIINSSDDDE TKIYKPYNIS SSSTGIMTRS NNSIPHSKRT SPRLSLSCSS PDIKRAIIVP
301: SVKQTSPPSP PPPSQEVTLQ QHKKPTLTYV PQRVKFSQPP PPPDMSRLKS PNNQLQETSK PSAPPPPPPP PPPPLSTSRV LGGKVASRVT NSIEPPRSQR
401: SSLSVKPQSS SPTPRSGYVV SEKRSHLEEQ RGEAIHDTDT RDESKPRLKP LHWDKVRATS ERATVWDQLK SSSFQLNENM MESLFGCNSV NSVPNEVAKK
501: SVRPTVEKEN RVLDPKKSQN IAIMLRALNV TKDEVSESLL DGSAEGLGPE LLESLVKMAP TKEEEIKLRD YNGDTSKLGS AERFLKAILD IPFAFKRVEA
601: MLYRANFDAE VKDLRKSFQT LEEASQELKN SRLFFKLLEA VLRAGNRMNV GTNRGDARAF KLETLLKLID IKGTDGKTTL LHFVVQEIIR SEGLSSDDNN
701: LSNIKFKEEE FKKQGLQVVG GLSRELCNVK KAAGMDSDVL SGYVSKLEAG LVKVRSVLQY EKTCMEGNFF ESMKVFLKEA EDGIVRIKAE ERKALSMVKE
801: VTEYFHGDAA KEEAHPLRIF LIVRDFLCIL DSVCKDVGMM QDRTMVGAAR SFRIATTASL PVLNRYNARQ DRSWDDDSSS P

Best Arabidopsis Sequence Match ( AT5G67470.1 )
(BLAST)

001: MKALQSRFFF FFFFYIFFSV SVSSEAHRRI LHQPLFPESS TPPPPDFQST PSPPLPDTPD QPFFPENPST PQQTLFPPPP PPVSADVNGG LPIPTATTQS
101: AKPGKKVAIV ISVGIVTLGM LSALAFFLYR HKAKHASDTQ KLVTGGGDGG GSRRFQEDSG PPTTTSSTFL YMGTVEPTRV SASESNGGTN GPVNSSPYRK
201: LNSAKRSERY RPSPELQPLP PLAKPPQPSD NSPSALSPSS SSSGEECRDT AFYTPHGSAI SSDDGYYTAF PRSANGSLPH SKRTSPRSKF GSAPTTAASR
301: SPEMKHVIIP SIKQKLPPPV QPPPLRGLES DEQELPYSQN KPKFSQPPPP PNRAAFQAIT QEKSPVPPPR RSPPPLQTPP PPPPPPPLAP PPPPQKRPRD
401: FQMLRKVTNS EATTNSTTSP SRKQAFKTPS PKTKAVEEVN SVSAGSLEKS GDGDTDPSKP KLKPLHWDKV RASSDRATVW DQLKSSSFQL NEDRMEHLFG
501: CNSGSSAPKE PVRRSVIPLA ENENRVLDPK KSQNIAILLR ALNVTREEVS EALTDGNPES LGAELLETLV KMAPTKEEEI KLREYSGDVS KLGTAERFLK
601: TILDIPFAFK RVEAMLYRAN FDAEVKYLRN SFQTLEEASL ELKASRLFLK LLEAVLMTGN RMNVGTNRGD AIAFKLDTLL KLVDIKGVDG KTTLLHFVVQ
701: EITRSEGTTT TKDETILHGN NDGFRKQGLQ VVAGLSRDLV NVKKSAGMDF DVLSSYVTKL EMGLDKLRSF LKTETTQGRF FDSMKTFLKE AEEEIRKIKG
801: GERKALSMVK EVTEYFHGNA AREEAHPLRI FMVVRDFLGV LDNVCKEVKT MQEMSTSMGS ASARSFRISA TASLPVLHRY KARQDDTSSD SEHSSNSST

Arabidopsis Description

FH6Formin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX6]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.