Factsheet for PGSC0003DMT400063143

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	31.85	81.3
PGSC0003DMT400029052	Potato	cytosol	59.55	67.75
Zm00001d030781_P001	Maize	cytosol	22.93	67.29
TraesCS5D01G089100.1	Wheat	cytosol	59.55	61.11
PGSC0003DMT400020452	Potato	cytosol	30.25	57.58
Zm00001d030780_P001	Maize	cytosol	29.94	52.81
PGSC0003DMT400079306	Potato	cytosol	64.97	50.62
GSMUA_Achr7P26410_001	Banana	endoplasmic reticulum, golgi	77.71	50.21
AT5G07780.1	Thale cress	plastid	65.29	44.18
KRH03521	Soybean	plastid	82.8	38.4
AT5G07770.3	Thale cress	plastid	67.52	29.08
CDY40774	Canola	cytosol	78.34	26.42
AT5G07650.1	Thale cress	cytosol	68.15	26.26
PGSC0003DMT400083315	Potato	cytosol	15.29	25.81
AT5G07760.2	Thale cress	cytosol, plastid	65.92	23.88
GSMUA_Achr3P30260_001	Banana	mitochondrion, plasma membrane	75.16	21.81
KRH56878	Soybean	cytosol	82.48	21.46
VIT_17s0000g06640.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	86.62	20.47
CDY14029	Canola	cytosol	78.34	19.98
PGSC0003DMT400039073	Potato	cytosol	16.88	19.63
GSMUA_Achr6P16780_001	Banana	cytosol	73.25	19.61
KRH54596	Soybean	extracellular	80.25	19.58
CDX99025	Canola	cytosol	72.29	19.47
PGSC0003DMT400067386	Potato	cytosol	21.02	19.02
CDX69994	Canola	plastid	71.34	18.87
Bra009306.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	71.34	18.11
CDX69993	Canola	cytosol	65.92	17.07
CDX81069	Canola	nucleus	78.03	16.87
PGSC0003DMT400036575	Potato	mitochondrion	15.29	16.78
PGSC0003DMT400056393	Potato	cytosol	25.48	16.67
Bra005952.1-P	Field mustard	nucleus	77.07	16.35
CDX99026	Canola	cytosol	65.92	16.29
CDX78309	Canola	nucleus	77.39	16.23
Bra028684.1-P	Field mustard	cytosol, nucleus, plasma membrane	78.34	15.12
AT5G07740.2	Thale cress	nucleus	79.3	14.79
PGSC0003DMT400031544	Potato	cytosol	20.7	14.32
Os07t0596300-02	Rice	plastid	73.57	14.2
OQU90190	Sorghum	cytosol	73.25	14.01
Zm00001d006758_P003	Maize	cytosol	71.97	13.94
Zm00001d022040_P002	Maize	cytosol, mitochondrion, nucleus, plasma membrane	73.89	13.66
GSMUA_Achr4P32680_001	Banana	cytosol, mitochondrion	75.48	13.57
HORVU5Hr1G020180.51	Barley	mitochondrion	67.83	10.92
KXG23793	Sorghum	cytosol	68.15	10.62
Zm00001d041515_P003	Maize	mitochondrion	68.15	10.0
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	23.57	9.8
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	24.84	8.96
PGSC0003DMT400013717	Potato	plastid	24.52	8.94
PGSC0003DMT400058304	Potato	plasma membrane	21.97	8.62
PGSC0003DMT400055250	Potato	vacuole	24.2	8.58
PGSC0003DMT400038519	Potato	endoplasmic reticulum	23.89	8.51
PGSC0003DMT400063186	Potato	plastid	20.38	8.48
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	24.52	8.16
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	23.25	8.11
PGSC0003DMT400036332	Potato	plasma membrane	22.61	7.69
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	9.55	3.84
KRH63288	Soybean	cytosol	2.87	0.95
Os04t0245000-00	Rice	plasma membrane	2.23	0.55
KRH03523	Soybean	cytosol	0.32	0.14
TraesCS6A01G357300.1	Wheat	endoplasmic reticulum, golgi	0.0	0.0
CDY02798	Canola	cytosol	0.0	0.0
Bra020386.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400063143	EnsemblPlantsGene:PGSC0003DMG400024560	Gene3D:1.20.58.2220	InterPro:FH2_Formin	InterPro:IPR015425	ncoils:Coil
PANTHER:PTHR23213	PANTHER:PTHR23213:SF271	PFAM:PF02181	PFscan:PS51444	PGSC:PGSC0003DMG400024560	SEG:seg
SMART:SM00498	SUPFAM:SSF101447	UniParc:UPI0002966AF6	UniProt:M1CA49	MapMan:20.2.2.6.2	:

Description

Formin 20 [Source:PGSC_GENE;Acc:PGSC0003DMG400024560]

Coordinates

chr3:+:55515061..55524395

Molecular Weight (calculated)

35364.2 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.240

Length

314 amino acids

Sequence
(BLAST)

001: MPLPDMMAAA LAMDESILDA DQVENLIKFC PTKDEMELLK NYTGDMDLLG KCEQFFLELM KVPRVESKLR VFLFKIQFNS QVTDFKKSLN TVNSACEEVR
101: HSLKLKEILK KILYLGNALN QGTARGSAIG FKLDSLLKLT DTRATNNKMT LMHYLCKVLA SKSPSLLDFH VDLVSLEAAS KIQLKSLAEE MQAIIKGLEK
201: VKKELEASET DGPVSEIFRK TLKEFVGVAE AQVDSVKDLY SVAGRNADAL ALYFGEDPAR CPFEQVTATL LNFVRLFRKA HEENLKQAEL ERKKVQKEEM
301: ENAKGVNLNK KGFK

Best Arabidopsis Sequence Match ( AT5G07740.3 )
(BLAST)

0001: MALFRRFFYK KPPDRLLEIS ERVYVFDCCF SSDVMGEDEY KVYLGGIVAQ LQDHFPEASF MVFNFREGEQ RSQISDVLSQ YDMTVMDYPR QYESCPLLPL
0101: EMIHHFLRSS ESWLSLEGQQ NVLLMHCERG GWPVLAFMLS GLLLYRKQYH GEQKTLEMVH KQAPKELLHL LSPLNPQPSQ LRYLQYISRR NLGSDWPPSD
0201: TPLLLDCLIL RDLPHFEGKK GCRPILRVYG QDPKARTNRS SILLFSTLKT KKHTRLYQQE ECILVKLDIQ CRVQGDVVLE CIHLHDDLVS EEMVFRIMFH
0301: TAFVRANILM LQRDEMDILW DVKDQFPKEF KAEVLFSGAD AVVPPITTST LSDDENDFDM TSPEEFFEVE EIFSDVIDGP DHKRDSDSFV VVDTASDDSE
0401: GKEVWKGDVE PNAFLDCASD DSNHKHDMHA ETSTDPVKDI TVDDVQYRSD GKADSNIDSV KDIGIDDGDE QRKRRTVEAK ENDSSTVQTQ SKGDEESNDL
0501: ESMSQKTNTS LNKPISEKPQ ATLRKQVGAN AKPAAAGDSL KPKSKQQETQ GPNVRMAKPN AVSRWIPSNK GSYKDSMHVA YPPTRINSAP ASITTSLKDG
0601: KRATSPDGVI PKDAKTKYLR ASVSSPDMRS RAPICSSPDS SPKETPSSLP PASPHQAPPP LPSLTSEAKT VLHSSQAVAS PPPPPPPPPL PTYSHYQTSQ
0701: LPPPPPPPPP FSSERPNSGT VLPPPPPPPP PFSSERPNSG TVLPPPPPPP LPFSSERPNS GTVLPPPPSP PWKSVYASAL AIPAICSTSQ APTSSPTPPP
0801: PPPAYYSVGQ KSSDLQTSQL PSPPPPPPPP PFASVRRNSE TLLPPPPPPP PWKSLYASTF ETHEACSTSS SPPPPPPPPP FSPLNTTKAN DYILPPPPLP
0901: YTSIAPSPSV KILPLHGISS APSPPVKTAP PPPPPPPFSN AHSVLSPPPP SYGSPPPPPP PPPSYGSPPP PPPPPPSYGS PPPPPPPPPG YGSPPPPPPP
1001: PPSYGSPPPP PPPPFSHVSS IPPPPPPPPM HGGAPPPPPP PPMHGGAPPP PPPPPMHGGA PPPPPPPPMH GGAPPPPPPP MFGGAQPPPP PPMRGGAPPP
1101: PPPPMRGGAP PPPPPPMRGG APPPPPPPMH GGAPPPPPPP MRGGAPPPPP PPGGRGPGAP PPPPPPGGRA PGPPPPPGPR PPGGGPPPPP MLGARGAAVD
1201: PRGAGRGRGL PRPGFGSAAQ KKSSLKPLHW VKVTRALQGS LWDELQRHGE SQTPSEFDVS EIETLFSATV QKPADKSGSR RKSVGAKPEK VQLIDLRRAN
1301: NTEIMLTKVK MPLPDMMAAV LAMDESVLDV DQIENLIKFC PTKEEMELLK NYTGDKTTLG KCEQYFLELM KVPRVEAKLR VFSFKFQFGT QITEFKKSLN
1401: AVNSACEEVR SSQKLKEIMK KILYLGNTLN QGTARGAAVG FKLDSLSKLS DTRAANSKMT LMHYLCKVLA SKASVLLDFP KDLESLESAS KIQLKSLAEE
1501: MQAIIKGLEK LNQELTASES DGPVSDVFRK TLGDFISVAE TEVATVSSLY SVVGRNADAL AHYFGEDPNR CPFEQVTATL LNFIRLFKKA HEENVKQAEL
1601: EKKKALKEAE MEKAKGVNLT KKPVDDS

Arabidopsis Description

actin binding [Source:TAIR;Acc:AT5G07740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.