Factsheet for PGSC0003DMT400020452

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	38.18	51.22
PGSC0003DMT400029052	Potato	cytosol	78.18	46.74
PGSC0003DMT400063143	Potato	cytosol	57.58	30.25
PGSC0003DMT400079306	Potato	cytosol	56.36	23.08
Solyc12g010110.1.1	Tomato	cytosol	95.76	12.16
Os08t0280200-02	Rice	nucleus	62.42	11.53
PGSC0003DMT400067386	Potato	cytosol	20.61	9.8
KRH72294	Soybean	cytosol	66.67	9.1
KRH03063	Soybean	cytosol	66.06	9.02
AT5G58160.1	Thale cress	cytosol	68.48	8.93
CDY62689	Canola	cytosol	69.09	8.82
Bra002668.1-P	Field mustard	cytosol	69.09	8.82
CDY32721	Canola	cytosol	65.45	8.68
CDY43877	Canola	cytosol	68.48	8.57
CDY02799	Canola	cytosol	64.85	8.55
PGSC0003DMT400036575	Potato	mitochondrion	14.55	8.39
TraesCS6B01G389300.1	Wheat	cytosol	62.42	7.71
Bra020385.1-P	Field mustard	cytosol	64.85	7.66
TraesCS6D01G339300.1	Wheat	cytosol	61.82	7.64
VIT_11s0016g00160.t01	Wine grape	cytosol	53.33	7.63
Os02t0794900-00	Rice	cytosol	61.21	7.32
TraesCS1B01G094200.1	Wheat	cytosol	61.21	7.2
TraesCS1D01G077900.1	Wheat	cytosol	60.0	7.07
TraesCS1A01G075600.1	Wheat	cytosol	59.39	7.06
KXG31267	Sorghum	cytosol	61.82	6.84
PGSC0003DMT400056393	Potato	cytosol	19.39	6.67
HORVU5Hr1G123610.1	Barley	cytosol, plastid	1.21	5.0
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	18.79	4.11
PGSC0003DMT400031544	Potato	cytosol	10.91	3.96
PGSC0003DMT400083315	Potato	cytosol	4.24	3.76
PGSC0003DMT400013717	Potato	plastid	19.39	3.72
PGSC0003DMT400058304	Potato	plasma membrane	17.58	3.62
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	18.79	3.56
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	18.79	3.44
PGSC0003DMT400036332	Potato	plasma membrane	18.79	3.36
PGSC0003DMT400038519	Potato	endoplasmic reticulum	16.97	3.18
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	18.18	3.18
PGSC0003DMT400055250	Potato	vacuole	16.36	3.05
PGSC0003DMT400039073	Potato	cytosol	4.85	2.96
PGSC0003DMT400063186	Potato	plastid	13.33	2.91
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	9.09	1.92
GSMUA_Achr1P25980_001	Banana	plasma membrane	2.42	1.41
Zm00001d032101_P001	Maize	cytosol	0.61	0.15
OQU80260	Sorghum	cytosol	0.61	0.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400020452	EnsemblPlantsGene:PGSC0003DMG402007901	Gene3D:1.20.58.2220	InterPro:FH2_Formin	InterPro:IPR015425	ncoils:Coil
PANTHER:PTHR23213	PANTHER:PTHR23213:SF190	PFAM:PF02181	PFscan:PS51444	PGSC:PGSC0003DMG402007901	SEG:seg
SUPFAM:SSF101447	UniParc:UPI0002957ABE	UniProt:M1ADI0	MapMan:20.2.2.6.2	:	:

Description

Formin 13 [Source:PGSC_GENE;Acc:PGSC0003DMG402007901]

Coordinates

chr12:-:2250789..2254048

Molecular Weight (calculated)

18834.7 Da

IEP (calculated)

4.842

GRAVY (calculated)

-0.424

Length

165 amino acids

Sequence
(BLAST)

001: MTLMHYLCKI LTDKLPELLD FSKDLSSLEP ALKIQLKYLA EEMKAISKGM EKVVDELSMS ENDGLMSENF CKALTEFLSC AEGEVSSLAQ LFSDVGKNVD
101: SLIIYFGEDP ARCPFEQVVS TLMSFQRMFN QALEENRKQL EFERKKAEKE AKEKQRTSAS DHKKT

Best Arabidopsis Sequence Match ( AT5G58160.1 )
(BLAST)

0001: MALFRKLFYR KPPDGLLEIC DRVFVFDCCF STDSWEEENY KVYMAGVVNQ LQEHFPEASS LVFNFREVGT RSVMADVLSE HGLTIMDYPR HYEGCSLLPV
0101: EVMHHFLRSS ESWLSLGPNN LLLMHCESGA WPVLAFMLAA LLIYRKQYSG ESKTLDMIYK QAPRELLRLF SPLNPIPSQL RYLQYVSRRN LVSEWPPLDR
0201: ALTMDCVILR FIPDVSGQGG FRPMFRIYGQ DPFFVDDKKP KLLYTTPKKG KHLRVYKQAE CELVKIDINC HVQGDIVIEC LSLNDDMERE VMMFRVVFNT
0301: AFIRSNILML NRDEVDTLWH IKEFPKGFRV ELLFSDMDAA SSVDLMNFSS LEEKDGLPIE VFSKVHEFFN QVDWVDQTDA TRNMFQQLAI ANAVQEGLDG
0401: NSSPRLQGLS PKSIHDIMKH AAIENSAKFK LSSMSEVETI DTPEKPPTDS VKKFIAEDVH SVLQINNQEQ NASEDATKLL HQESPSLKLV HHSATVKPLV
0501: DDSKSPENAE ENFPKSPSAH DGKAISFSPP TPSPPHPVRP QLAQAGAPPP PPPLPAAASK PSEQLQHSVV QATEPLSQGN SWMSLAGSTF QTVPNEKNLI
0601: TLPPTPPLAS TSHASPEPSS KTTNSLLLSP QASPATPTNP SKTVSVDFFG AATSPHLGAS DNVASNLGQP ARSPPPISNS DKKPALPRPP PPPPPPPMQH
0701: STVTKVPPPP PPAPPAPPTP IVHTSSPPPP PPPPPPPAPP TPQSNGISAM KSSPPAPPAP PRLPTHSASP PPPTAPPPPP LGQTRAPSAP PPPPPKLGTK
0801: LSPSGPNVPP TPALPTGPLS SGKGRMLRVN LKNSPAKKLK PYHWLKLTRA VNGSLWAETQ MSSEASKAPD IDMTELESLF SASAPEQAGK SRLDSSRGPK
0901: PEKVQLIEHR RAYNCEIMLS KVKVPLQDLT NSVLNLEESA LDADQVENLI KFCPTREEME LLKGYTGDKD KLGKCELFFL EMMKVPRVET KLRVFSFKMQ
1001: FTSQISELRN SLGVVNSAAE QVKNSEKFKR IMQTILSLGN ALNQGTARGA AVGFKLDSLP KLSETRARNN RMTLMHYLCK ILAEKIPEVL DFTKELSSLE
1101: PATKIQLKFL AEEMQAINKG LEKVVQELSL SENDGPISHN FNKILKEFLH YAEAEVRSLA SLYSGVGRNV DGLILYFGED PAKCPFEQVV STLLNFVRLF
1201: NRAHEENGKQ LEAEAKKNAA EKEKPKTGGL DTEIKKPLNE EVKEEKTKTS GLGKEMSDRL KERTAP

Arabidopsis Description

FH13Formin-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.