Factsheet for PGSC0003DMT400063186

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113710.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	94.7	95.46
KRH63456	Soybean	cytosol	45.3	52.37
GSMUA_Achr6P04430_001	Banana	cytosol	28.87	51.29
KRH54463	Soybean	endoplasmic reticulum, golgi	49.01	51.18
VIT_17s0000g07570.t01	Wine grape	nucleus	55.5	49.35
PGSC0003DMT400083315	Potato	cytosol	10.46	42.47
PGSC0003DMT400058304	Potato	plasma membrane	44.64	42.12
GSMUA_Achr8P22610_001	Banana	plasma membrane	37.09	36.94
PGSC0003DMT400036575	Potato	mitochondrion	13.38	35.31
PGSC0003DMT400067386	Potato	cytosol	15.63	34.01
PGSC0003DMT400056393	Potato	cytosol	21.06	33.12
EES05554	Sorghum	plasma membrane	39.74	32.61
Zm00001d017983_P001	Maize	plasma membrane	38.68	31.7
TraesCS6D01G291400.1	Wheat	endoplasmic reticulum, plasma membrane	37.62	31.52
TraesCS6B01G342200.1	Wheat	endoplasmic reticulum, plasma membrane	37.62	31.52
KXG39193	Sorghum	plastid	35.23	31.22
TraesCS6A01G312000.2	Wheat	plastid	37.35	31.09
PGSC0003DMT400039073	Potato	cytosol	10.73	30.0
HORVU6Hr1G076870.4	Barley	plastid	36.95	29.78
PGSC0003DMT400031544	Potato	cytosol	16.82	27.97
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	24.9	24.9
PGSC0003DMT400013717	Potato	plastid	27.02	23.69
PGSC0003DMT400038519	Potato	endoplasmic reticulum	27.55	23.61
PGSC0003DMT400055250	Potato	vacuole	27.15	23.14
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	27.02	22.67
PGSC0003DMT400036332	Potato	plasma membrane	27.02	22.1
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	25.43	22.04
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	27.28	21.82
PGSC0003DMT400063143	Potato	cytosol	8.48	20.38
PGSC0003DMT400079306	Potato	cytosol	10.73	20.1
PGSC0003DMT400029052	Potato	cytosol	7.15	19.57
PGSC0003DMT400020452	Potato	cytosol	2.91	13.33
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	1.85	11.38
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	6.75	6.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400063186	EnsemblPlantsGene:PGSC0003DMG400024577	EntrezGene:102580270	Gene3D:1.20.58.2220	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:FH2_Formin	InterPro:IPR015425	ncoils:Coil	PANTHER:PTHR23213	PANTHER:PTHR23213:SF273
PFAM:PF02181	PFscan:PS51444	PGSC:PGSC0003DMG400024577	RefSeq:XP_006345180.1	SEG:seg	SMART:SM00498
SUPFAM:SSF101447	TMHMM:TMhelix	UniParc:UPI000295FD5E	UniProt:M1CA78	MapMan:20.2.2.6.1	:

Description

Actin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024577]

Coordinates

chr3:-:53603782..53606897

Molecular Weight (calculated)

84263.3 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.583

Length

755 amino acids

Sequence
(BLAST)

001: MNTPGPPPTN SSQNQVVLKA VIAAVVSTLV VAGILFYFFY RYYVIRRWKK NKLSSSFRRE MPHQEFQQTG ALKGLIVDEN GLDVIYLRRF EGSQLGSCFS
101: KIWVNHMDED EDEDEEEEKR IDSGQEQPVS SDHIQEMPLL QNCSNVGSYE NKEAVTASQQ TTNSLFAASR SSKQPSTSLQ FQQKEIIPPQ PETPSQLALV
201: SSQNPPQPPI PPPAPPPPPP QLPIPPPAPP PPPPPLPMKR IAKAPTPPNA GKIKSSPPPP PKGGGLSSLI KPPIAPRGKG SRKDKAEAQN EEKSNENGET
301: QVKLRPLHWD KVVANADHSM VWDEINNGSF RFEDDLMEVL FGYNVTSNRT PEGNRATTSS GTSKLARPTQ MFILDPRKSQ NTAIVLKSLS VSRKEILDAL
401: TEGQGLSVDT LEKLTKIRPT EEETSKILQF DGNTRKLADA ESFLYQMLKA VPSAFKRFNA MLFRSNYDPE ILNLKENLQT IELGCKELRT SRIFIRLLEA
501: ILKAGNRMNA GTARGNAQGF NLSALQKLSY VKSNDGKTTL LHFVVEQVIC SEGKRCLINK GHKDDSDRKT EKVEKDTEHL TLGLPVLQGL SSEFSNVKKA
601: ATIDYDSFIN TCSTLTTRVN DVQQLITCCG IAEKDQFVKE TKGFLEECEE ELKVIREEQT RVMELVKRTT EYYQAGTSKE KGTQSLQLFA FVKDFLDMVD
701: KVCVDITKKV QKKSAATVES SPPPRSPRPI TPVRFHNLRT YFTPEIVSSE SENDF

Best Arabidopsis Sequence Match ( AT1G70140.1 )
(BLAST)

001: MAAMFNHPWP NLTLIYFFFI VVLPFQSLSQ FDSPQNIETF FPISSLSPVP PPLLPPSSNP SPPSNNSSSS DKKTITKAVL ITAASTLLVA GVFFFCLQRC
101: IIARRRRDRV GPVRVENTLP PYPPPPMTSA AVTTTTLARE GFTRFGGVKG LILDENGLDV LYWRKLQSQR ERSGSFRKQI VTGEEEDEKE VIYYKNKKKT
201: EPVTEIPLLR GRSSTSHSVI HNEDHQPPPQ VKQSEPTPPP PPPSIAVKQS APTPSPPPPI KKGSSPSPPP PPPVKKVGAL SSSASKPPPA PVRGASGGET
301: SKQVKLKPLH WDKVNPDSDH SMVWDKIDRG SFSFDGDLME ALFGYVAVGK KSPEQGDEKN PKSTQIFILD PRKSQNTAIV LKSLGMTREE LVESLIEGND
401: FVPDTLERLA RIAPTKEEQS AILEFDGDTA KLADAETFLF HLLKSVPTAF TRLNAFLFRA NYYPEMAHHS KCLQTLDLAC KELRSRGLFV KLLEAILKAG
501: NRMNAGTARG NAQAFNLTAL LKLSDVKSVD GKTSLLNFVV EEVVRSEGKR CVMNRRSHSL TRSGSSNYNG GNSSLQVMSK EEQEKEYLKL GLPVVGGLSS
601: EFSNVKKAAC VDYETVVATC SALAVRAKDA KTVIGECEDG EGGRFVKTMM TFLDSVEEEV KIAKGEERKV MELVKRTTDY YQAGAVTKGK NPLHLFVIVR
701: DFLAMVDKVC LDIMRNMQRR KVGSPISPSS QRNAVKFPVL PPNFMSDRAW SDSGGSDSDM

Arabidopsis Description

FH8Formin-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:O04532]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.