Factsheet for PGSC0003DMT400049488

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064010.2.1	Tomato	golgi	94.6	92.69
PGSC0003DMT400083315	Potato	cytosol	17.91	83.87
PGSC0003DMT400036575	Potato	mitochondrion	26.41	80.42
VIT_19s0014g05040.t01	Wine grape	cytosol, plastid	38.81	67.74
PGSC0003DMT400039073	Potato	cytosol	20.32	65.56
PGSC0003DMT400031544	Potato	cytosol	33.64	64.54
PGSC0003DMT400067386	Potato	cytosol	24.23	60.81
GSMUA_Achr8P07370_001	Banana	endoplasmic reticulum, golgi	30.42	53.32
GSMUA_Achr3P23040_001	Banana	cytosol, mitochondrion, plastid	35.71	47.92
CDY43029	Canola	plasma membrane	47.07	47.51
Bra029012.1-P	Field mustard	plasma membrane	46.73	47.38
CDY43811	Canola	golgi	46.27	47.24
CDY42470	Canola	plasma membrane	46.27	46.91
Bra002969.1-P	Field mustard	plasma membrane	47.07	46.75
AT5G54650.1	Thale cress	extracellular, mitochondrion, nucleus, plasma membrane	47.99	46.44
CDY18346	Canola	plasma membrane	46.15	46.1
KRH22219	Soybean	endoplasmic reticulum, golgi, plasma membrane	47.3	45.42
KRH27118	Soybean	plasma membrane	46.84	45.18
KRH25896	Soybean	plasma membrane	47.88	42.86
PGSC0003DMT400056393	Potato	cytosol	23.31	42.29
PGSC0003DMT400036332	Potato	plasma membrane	44.78	42.25
KRH55607	Soybean	plasma membrane	47.3	42.13
Os04t0100300-00	Rice	plasma membrane	36.39	38.52
EER99497	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	38.58	37.05
EES10325	Sorghum	golgi	40.64	36.72
Zm00001d004557_P002	Maize	golgi, plasma membrane, vacuole	39.72	36.58
TraesCS2A01G214500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	39.61	36.47
Zm00001d006549_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	38.35	36.23
TraesCS2B01G239500.1	Wheat	plasma membrane	38.92	36.03
Os07t0545500-01	Rice	plasma membrane	38.35	35.95
TraesCS2D01G220300.1	Wheat	plasma membrane	39.04	35.53
HORVU0Hr1G015390.6	Barley	cytosol, plasma membrane, plastid	33.64	35.05
TraesCS6D01G124300.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	34.1	34.94
TraesCS6B01G163200.1	Wheat	plasma membrane	33.75	34.83
GSMUA_Achr2P14090_001	Banana	mitochondrion	26.52	34.74
TraesCS6A01G135200.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	33.75	34.59
Zm00001d024947_P005	Maize	plasma membrane	39.49	34.3
Os02t0161100-01	Rice	golgi	34.33	33.94
EES04559	Sorghum	plasma membrane	33.07	33.72
TraesCS2D01G043300.1	Wheat	extracellular, plasma membrane	38.92	33.04
TraesCS2A01G044700.1	Wheat	extracellular, plasma membrane	39.27	32.95
HORVU2Hr1G043830.5	Barley	cytosol, nucleus, plastid	38.35	32.49
TraesCS2B01G056800.1	Wheat	extracellular, plasma membrane	39.04	32.44
Zm00001d015326_P003	Maize	mitochondrion, plastid	33.41	28.75
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	24.91	28.74
PGSC0003DMT400055250	Potato	vacuole	28.24	27.77
PGSC0003DMT400013717	Potato	plastid	27.1	27.41
PGSC0003DMT400058304	Potato	plasma membrane	24.91	27.12
PGSC0003DMT400038519	Potato	endoplasmic reticulum	27.21	26.9
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	26.87	26.0
PGSC0003DMT400063186	Potato	plastid	22.04	25.43
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	27.32	25.21
PGSC0003DMT400063143	Potato	cytosol	8.96	24.84
PGSC0003DMT400029052	Potato	cytosol	7.58	23.91
PGSC0003DMT400079306	Potato	cytosol	10.79	23.33
PGSC0003DMT400020452	Potato	cytosol	3.56	18.79
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	2.07	14.63
HORVU2Hr1G006690.1	Barley	peroxisome	14.24	14.2
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	4.25	4.73

Protein Annotations

Gene3D:1.20.58.2220	MapMan:20.2.2.6.1	InterPro:FH2_Formin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	InterPro:IPR015425	UniProt:M1BNU3	PFAM:PF02181	EnsemblPlantsGene:PGSC0003DMG400019229	PGSC:PGSC0003DMG400019229
EnsemblPlants:PGSC0003DMT400049488	PRINTS:PR01217	PFscan:PS51444	PANTHER:PTHR23213	PANTHER:PTHR23213:SF195	SMART:SM00498
SUPFAM:SSF101447	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00029640B9	SEG:seg	:

Description

Actin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019229]

Coordinates

chr7:-:54195425..54201960

Molecular Weight (calculated)

95664.6 Da

IEP (calculated)

8.804

GRAVY (calculated)

-0.480

Length

871 amino acids

Sequence
(BLAST)

001: MGVRGVVVHF FVFFFMLLVA VLGSNKDSDD HLLDNLINSP EINRDMVELL WLNCRIELTR ANKAVEDLKY YVTGEVLSVR DEVLKSSSEK HKHIGDLHPL
101: VKQALLGCLR EKNLLFLMCG EEKGSPNWYA RCAEFLSSWH GAPKRRILKA APNPPPAPPK SKPAKSRDDK NSKKKSAAKD SKKTNTVGVP IIAAAAAISF
201: LIALLCICCC CKCCRRSKKG LNDERPLLSL SSSDYSSHKS SALGSSFNNA GNHSFNNNPN DDSKIEIRRT GPAGMPPLKP PPGRAVPSEA PAPPAPPPPA
301: KPTTPAPAAP PPPPGKPSSV GPSPPKAGPP PPPPMKPGPR APPRPPSMGL KPPRISPLGP NASTSASTEE EDTDPKTKLK PFFWDKVQAN TDQSMVWHHV
401: KAGSFQFDEE QIETLFGFAS AEKKKNGSKK DSSQDPSNLY IQIIDQKKAQ NLSILLKALN VTTEEVCDAL KEGNELPAEL IQTLIKMAPT AEEELKLRIY
501: NGELSRLGQA ERFLKALVEV PFAFKRLETL LFMCTLQDEA SLIKESFATL EAASVELRNS RLFLKLLEAV LKTGNRMNDG TFRGGAQAFK LDTLLKLSDV
601: KGIDGKTTLL HFVVQEIIRS EGIRAARAAR DQRSLSSIKS DDLLEDLPQD QEDQYRNTGL QVVSGLSSDL GNVKKAAILD ADNLTGIVSK LGHALIKARE
701: FLNSEMKNMD DEDGFHQTMK NFVQNAEGDV MSLLEEEKRI MALVKSTGDY FHGNAKRDEG LRLFVIVRDF LVILDKVCRE VKNAPRKINS TPRRENVTLT
801: TSESTLSQRP DQSVPSPRPD QSVPSARPDQ AIPSARPDQA IPSARPDQRQ KLFPAIADRR IDDFSSDDDS P

Best Arabidopsis Sequence Match ( AT5G54650.1 )
(BLAST)

001: MVGMIRGGMG DQNWSRLVFW LILFSGLLVI TLEENPEKDE IFLSQFMAPS TGQVNEHMEE TSWAQRCWQD SDCVKEAVAE FNLCFPGSKD SRELFGLNHT
101: NLKQTLLDCI QEKGKLNGHN PKYLELLSSM LDIPRRNLAT KPGSSPSPSP SRPPKRSRGP PRPPTRPKSP PPRKSSFPPS RSPPPPPAKK NASKNSTSAP
201: VSPAKKKEDH EKTIIIAVVV TAVSTFLLAA LFFLCCSRVC GNGSGGRKND ERPLLSLSSS DYSVGSSINY GGSVKGDKQG HQSFNIYSNQ GKMSSFDGSN
301: SDTSDSLEER LSHEGLRNNS ITNHGLPPLK PPPGRTASVL SGKSFSGKVE PLPPEPPKFL KVSSKKASAP PPPVPAPQMP SSAGPPRPPP PAPPPGSGGP
401: KPPPPPGPKG PRPPPPMSLG PKAPRPPSGP ADALDDDAPK TKLKPFFWDK VQANPEHSMV WNDIRSGSFQ FNEEMIESLF GYAAADKNKN DKKGSSGQAA
501: LPQFVQILEP KKGQNLSILL RALNATTEEV CDALREGNEL PVEFIQTLLK MAPTPEEELK LRLYCGEIAQ LGSAERFLKA VVDIPFAFKR LEALLFMCTL
601: HEEMAFVKES FQKLEVACKE LRGSRLFLKL LEAVLKTGNR MNDGTFRGGA QAFKLDTLLK LADVKGTDGK TTLLHFVVQE IIRTEGVRAA RTIRESQSFS
701: SVKTEDLLVE ETSEESEENY RNLGLEKVSG LSSELEHVKK SANIDADGLT GTVLKMGHAL SKARDFVNSE MKSSGEESGF REALEDFIQN AEGSIMSILE
801: EEKRIMALVK STGDYFHGKA GKDEGLRLFV IVRDFLIILD KSCKEVREAR GRPVRMARKQ GSTASASSET PRQTPSLDPR QKLFPAITER RVDQSSSDSD

Arabidopsis Description

FH5Formin-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q94B77]
SUBAcon: [mitochondrion,plasma membrane,extracellular,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.