Factsheet for PGSC0003DMT400079305

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G386500.1	Wheat	cytosol	15.47	24.95
TraesCS2A01G388700.1	Wheat	cytosol	15.35	24.74
GSMUA_Achr3P13420_001	Banana	cytosol	13.3	16.77
Solyc03g115670.1.1	Tomato	cytosol, mitochondrion	9.59	16.23
Solyc03g115680.2.1	Tomato	plastid	8.06	12.12
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	1.79	11.38
PGSC0003DMT400029052	Potato	cytosol	3.58	10.14
TraesCS2A01G388800.1	Wheat	cytosol	4.73	9.69
TraesCS2D01G386600.1	Wheat	cytosol	4.73	9.64
PGSC0003DMT400063143	Potato	cytosol	3.84	9.55
PGSC0003DMT400020452	Potato	cytosol	1.92	9.09
PGSC0003DMT400079306	Potato	cytosol	4.35	8.44
PGSC0003DMT400055250	Potato	vacuole	8.82	7.79
PGSC0003DMT400038519	Potato	endoplasmic reticulum	7.8	6.92
PGSC0003DMT400063186	Potato	plastid	6.52	6.75
PGSC0003DMT400013717	Potato	plastid	7.16	6.5
PGSC0003DMT400058304	Potato	plasma membrane	6.52	6.38
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	7.16	5.93
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	6.27	5.44
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	5.12	5.3
PGSC0003DMT400036332	Potato	plasma membrane	5.24	4.44
PGSC0003DMT400083315	Potato	cytosol	1.02	4.3
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	4.73	4.25
PGSC0003DMT400056393	Potato	cytosol	2.56	4.17
PGSC0003DMT400036575	Potato	mitochondrion	1.15	3.15
PGSC0003DMT400031544	Potato	cytosol	1.79	3.08
PGSC0003DMT400067386	Potato	cytosol	1.15	2.59
PGSC0003DMT400039073	Potato	cytosol	0.9	2.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400079305	EnsemblPlantsGene:PGSC0003DMG401030866	Gene3D:2.60.40.1110	InterPro:IPR014020	InterPro:Tensin_C2-dom	ncoils:Coil
PANTHER:PTHR23213	PANTHER:PTHR23213:SF334	PFAM:PF10409	PFscan:PS51182	PGSC:PGSC0003DMG401030866	SEG:seg
SMART:SM01326	SUPFAM:SSF101447	SUPFAM:SSF49562	UniParc:UPI000295B3C9	UniProt:M1D1K9	MapMan:35.1

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401030866]

Coordinates

chr8:-:48003620..48006147

Molecular Weight (calculated)

56732.2 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.281

Length

782 amino acids

Sequence
(BLAST)

001: MLYSMPKKGR SLRHYRQKDS DVIKIDIQCL VQGDVVLECV HLDLDPEREV MMFRIVFNTA FIRSNILMLN CDNLDILWDS KARYPKGFRA EVLFGDVESI
101: SPLKAPTAAL NGEETGGLPI EAFSRVQELF SGADWVDTGD DAALWLFKQL SVLNDMKDLS ILQSRMSGYS SPFDSEEENN ASSIADSLDF LDSEKASSLT
201: YANTTDVNFL DEQDSASDGT SDPKISEGQM KLSKSDIGPV QSLSESNCQL DTAIAPEHLK GVRVCDTRTS SSSLLPSPPP SPAPVISSIK VTQSSASSPP
301: SPPSMFGSPS KEVSLPPPPP PPPPPPPIIG GPSSVPRTPP LPPLASSNRS PPPPPPPPPP PSIGSHREXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXPRLPLQ PFSKALHLQH HLHFRPLLQI GKLRWHLHRH RLHLHPLRQK GQLRWHLHHH
701: HLHLHPLRQI GQLRWHLHLH LLHQIGQLRW HRHRHHLHRQ AILQGHLHLL HLLWEFLGKV PLHQHLHQHQ RLLMLHHPLG GV

Best Arabidopsis Sequence Match ( AT3G32420.1 )
(BLAST)

001: MASDRTSKVL FSMPKRSKAV RQYKKADCEL VKIDINCHIL GDVVLECITL GSDLEREEMM FRVVFNTAFL RSNILTLNRG EIDVLLNTTD RFPKDFSAEV
101: TTYLLFL

Arabidopsis Description

Actin-binding FH2 (Formin-like) protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.