Factsheet for PGSC0003DMT400029052

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020452	Potato	cytosol	46.74	78.18
PGSC0003DMT400063143	Potato	cytosol	67.75	59.55
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	25.72	57.72
PGSC0003DMT400079306	Potato	cytosol	64.49	44.17
Solyc07g005480.2.1	Tomato	vacuole	99.64	31.11
Os08t0280200-02	Rice	nucleus	72.46	22.4
PGSC0003DMT400083315	Potato	cytosol	14.13	20.97
PGSC0003DMT400067386	Potato	cytosol	22.46	17.87
KRH72294	Soybean	cytosol	76.09	17.37
KRH03063	Soybean	cytosol	75.0	17.14
VIT_11s0016g00160.t01	Wine grape	cytosol	68.12	16.29
AT5G58160.1	Thale cress	cytosol	74.28	16.19
CDY32721	Canola	cytosol	72.46	16.08
CDY62689	Canola	cytosol	75.0	16.02
Bra002668.1-P	Field mustard	cytosol	75.0	16.02
CDY02799	Canola	cytosol	72.1	15.91
CDY43877	Canola	cytosol	75.0	15.71
PGSC0003DMT400036575	Potato	mitochondrion	15.94	15.38
PGSC0003DMT400039073	Potato	cytosol	14.49	14.81
Bra020385.1-P	Field mustard	cytosol	73.19	14.47
TraesCS1A01G075600.1	Wheat	cytosol	69.93	13.9
TraesCS1B01G094200.1	Wheat	cytosol	69.93	13.76
TraesCS1D01G077900.1	Wheat	cytosol	69.57	13.7
TraesCS6D01G339300.1	Wheat	cytosol	65.94	13.63
TraesCS6B01G389300.1	Wheat	cytosol	65.94	13.62
PGSC0003DMT400056393	Potato	cytosol	23.55	13.54
Os02t0794900-00	Rice	cytosol	65.94	13.2
HORVU5Hr1G123610.1	Barley	cytosol, plastid	1.81	12.5
KXG31267	Sorghum	cytosol	65.22	12.07
PGSC0003DMT400031544	Potato	cytosol	18.12	11.01
PGSC0003DMT400064911	Potato	endoplasmic reticulum, plasma membrane	23.19	8.48
PGSC0003DMT400049488	Potato	golgi, plasma membrane, vacuole	23.91	7.58
PGSC0003DMT400013717	Potato	plastid	23.19	7.43
PGSC0003DMT400063186	Potato	plastid	19.57	7.15
PGSC0003DMT400038519	Potato	endoplasmic reticulum	22.83	7.15
PGSC0003DMT400055250	Potato	vacuole	22.83	7.11
PGSC0003DMT400063542	Potato	extracellular, golgi, plasma membrane	22.46	6.89
PGSC0003DMT400071147	Potato	endoplasmic reticulum, golgi	23.55	6.89
PGSC0003DMT400058304	Potato	plasma membrane	19.2	6.62
PGSC0003DMT400036332	Potato	plasma membrane	21.74	6.5
OQU80260	Sorghum	cytosol	26.45	6.44
PGSC0003DMT400079305	Potato	cytosol, mitochondrion, plastid	10.14	3.58
GSMUA_Achr1P25980_001	Banana	plasma membrane	1.09	1.06
Zm00001d032101_P001	Maize	cytosol	2.54	1.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400029052	EnsemblPlantsGene:PGSC0003DMG400011179	Gene3D:1.20.58.2220	InterPro:FH2_Formin	InterPro:IPR015425	ncoils:Coil
PANTHER:PTHR23213	PANTHER:PTHR23213:SF190	PFAM:PF02181	PFscan:PS51444	PGSC:PGSC0003DMG400011179	SEG:seg
SMART:SM00498	SUPFAM:SSF101447	UniParc:UPI000296595B	UniProt:M1AS57	MapMan:20.2.2.6.2	:

Description

Actin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011179]

Coordinates

chr7:-:699485..705574

Molecular Weight (calculated)

31484.2 Da

IEP (calculated)

9.158

GRAVY (calculated)

-0.439

Length

276 amino acids

Sequence
(BLAST)

001: METLKGYKGE KEKLGRCEQF MLELMQVPRT ESKLRVFSFK IQFESQVSEL RKSLNIVNSA ADQIKGSSKL KRIMQTILSL GNALNQGTAR GSAVGFRLDS
101: LLKLTETRAR NNKMTLMHYL CKVLADKLPE LLDFSNDLSS LEPCAKIQLK FLAEEMQAIS KGLEKVVQEL SMSENDGAVS ENFRKALKEF LCYAEGEVRS
201: LAQLYSGVGR NVDTLILYFG EDPARCPFEQ VITTLLNFRR MFNQALEENR KQVEFERKKA EKEAVEKQKM SHSEKT

Best Arabidopsis Sequence Match ( AT5G58160.1 )
(BLAST)

0001: MALFRKLFYR KPPDGLLEIC DRVFVFDCCF STDSWEEENY KVYMAGVVNQ LQEHFPEASS LVFNFREVGT RSVMADVLSE HGLTIMDYPR HYEGCSLLPV
0101: EVMHHFLRSS ESWLSLGPNN LLLMHCESGA WPVLAFMLAA LLIYRKQYSG ESKTLDMIYK QAPRELLRLF SPLNPIPSQL RYLQYVSRRN LVSEWPPLDR
0201: ALTMDCVILR FIPDVSGQGG FRPMFRIYGQ DPFFVDDKKP KLLYTTPKKG KHLRVYKQAE CELVKIDINC HVQGDIVIEC LSLNDDMERE VMMFRVVFNT
0301: AFIRSNILML NRDEVDTLWH IKEFPKGFRV ELLFSDMDAA SSVDLMNFSS LEEKDGLPIE VFSKVHEFFN QVDWVDQTDA TRNMFQQLAI ANAVQEGLDG
0401: NSSPRLQGLS PKSIHDIMKH AAIENSAKFK LSSMSEVETI DTPEKPPTDS VKKFIAEDVH SVLQINNQEQ NASEDATKLL HQESPSLKLV HHSATVKPLV
0501: DDSKSPENAE ENFPKSPSAH DGKAISFSPP TPSPPHPVRP QLAQAGAPPP PPPLPAAASK PSEQLQHSVV QATEPLSQGN SWMSLAGSTF QTVPNEKNLI
0601: TLPPTPPLAS TSHASPEPSS KTTNSLLLSP QASPATPTNP SKTVSVDFFG AATSPHLGAS DNVASNLGQP ARSPPPISNS DKKPALPRPP PPPPPPPMQH
0701: STVTKVPPPP PPAPPAPPTP IVHTSSPPPP PPPPPPPAPP TPQSNGISAM KSSPPAPPAP PRLPTHSASP PPPTAPPPPP LGQTRAPSAP PPPPPKLGTK
0801: LSPSGPNVPP TPALPTGPLS SGKGRMLRVN LKNSPAKKLK PYHWLKLTRA VNGSLWAETQ MSSEASKAPD IDMTELESLF SASAPEQAGK SRLDSSRGPK
0901: PEKVQLIEHR RAYNCEIMLS KVKVPLQDLT NSVLNLEESA LDADQVENLI KFCPTREEME LLKGYTGDKD KLGKCELFFL EMMKVPRVET KLRVFSFKMQ
1001: FTSQISELRN SLGVVNSAAE QVKNSEKFKR IMQTILSLGN ALNQGTARGA AVGFKLDSLP KLSETRARNN RMTLMHYLCK ILAEKIPEVL DFTKELSSLE
1101: PATKIQLKFL AEEMQAINKG LEKVVQELSL SENDGPISHN FNKILKEFLH YAEAEVRSLA SLYSGVGRNV DGLILYFGED PAKCPFEQVV STLLNFVRLF
1201: NRAHEENGKQ LEAEAKKNAA EKEKPKTGGL DTEIKKPLNE EVKEEKTKTS GLGKEMSDRL KERTAP

Arabidopsis Description

FH13Formin-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.