Factsheet for VIT_17s0000g06640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063143	Potato	cytosol	20.47	86.62
Solyc03g115680.2.1	Tomato	plastid	31.53	80.58
Solyc03g115670.1.1	Tomato	cytosol, mitochondrion	26.86	77.27
KRH03521	Soybean	plastid	38.15	74.89
PGSC0003DMT400083163	Potato	cytosol, mitochondrion, nucleus	6.77	73.17
Zm00001d030781_P001	Maize	cytosol	5.72	71.03
CDY40774	Canola	cytosol	48.68	69.5
TraesCS5D01G089100.1	Wheat	cytosol	15.65	67.97
GSMUA_Achr7P26410_001	Banana	endoplasmic reticulum, golgi	24.68	67.49
CDY14029	Canola	cytosol	61.4	66.29
KRH54596	Soybean	extracellular	61.4	63.4
AT5G07780.1	Thale cress	plastid	21.9	62.72
KRH56878	Soybean	cytosol	56.43	62.14
KRH03523	Soybean	cytosol	32.13	60.06
CDX99025	Canola	cytosol	52.3	59.61
TraesCS6A01G357300.1	Wheat	endoplasmic reticulum, golgi	14.75	58.86
CDX69994	Canola	plastid	51.09	57.2
Bra009306.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	52.82	56.75
KRH63288	Soybean	cytosol	40.18	56.45
CDX81069	Canola	nucleus	60.95	55.79
Bra005952.1-P	Field mustard	nucleus	61.7	55.41
Zm00001d030780_P001	Maize	cytosol	7.37	55.06
CDX78309	Canola	nucleus	61.85	54.91
Solyc07g005500.2.1	Tomato	cytosol	21.75	52.26
Bra028684.1-P	Field mustard	cytosol, nucleus, plasma membrane	63.51	51.87
GSMUA_Achr3P30260_001	Banana	mitochondrion, plasma membrane	42.06	51.66
AT5G07740.2	Thale cress	nucleus	65.09	51.4
GSMUA_Achr6P16780_001	Banana	cytosol	44.54	50.47
Bra020386.1-P	Field mustard	cytosol	17.08	49.78
VIT_11s0016g00160.t01	Wine grape	cytosol	42.66	49.13
CDY02798	Canola	cytosol	16.78	45.51
Os07t0596300-02	Rice	plastid	55.15	45.05
VIT_02s0033g01360.t01	Wine grape	cytosol, nucleus, plasma membrane	43.94	44.68
OQU90190	Sorghum	cytosol	53.35	43.18
CDX69993	Canola	cytosol	39.13	42.87
AT5G07770.3	Thale cress	plastid	23.48	42.8
Zm00001d006758_P003	Maize	cytosol	51.39	42.13
Zm00001d022040_P002	Maize	cytosol, mitochondrion, nucleus, plasma membrane	53.42	41.79
CDX99026	Canola	cytosol	39.88	41.7
VIT_04s0008g06530.t01	Wine grape	cytosol, nucleus, plasma membrane	46.05	41.58
GSMUA_Achr4P32680_001	Banana	cytosol, mitochondrion	49.81	37.92
AT5G07650.1	Thale cress	cytosol	21.6	35.21
AT5G07760.2	Thale cress	cytosol, plastid	22.65	34.72
HORVU5Hr1G020180.51	Barley	mitochondrion	48.53	33.06
KXG23793	Sorghum	cytosol	47.4	31.25
Zm00001d041515_P003	Maize	mitochondrion	49.06	30.47
Os04t0245000-00	Rice	plasma membrane	27.16	28.43
VIT_19s0014g05040.t01	Wine grape	cytosol, plastid	7.9	21.04
VIT_01s0026g00950.t01	Wine grape	endoplasmic reticulum	11.59	18.87
VIT_07s0129g00220.t01	Wine grape	endoplasmic reticulum, extracellular	12.57	18.85
VIT_12s0059g02680.t01	Wine grape	golgi	10.84	17.98
VIT_05s0094g00920.t01	Wine grape	nucleus	12.57	17.96
VIT_17s0000g07570.t01	Wine grape	nucleus	11.29	17.67
VIT_14s0108g00290.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	10.84	17.58
VIT_14s0060g02330.t01	Wine grape	golgi, plasma membrane, vacuole	11.66	16.18
VIT_00s0227g00200.t01	Wine grape	cytosol	1.66	14.38

Protein Annotations

Gene3D:1.20.58.2220	Gene3D:2.60.40.1110	MapMan:20.2.2.6.2	Gene3D:3.90.190.10	ProteinID:CCB43064	ProteinID:CCB43064.1
ncoils:Coil	UniProt:F6GT55	InterPro:FH2_Formin	EMBL:FN594950	InterPro:IPR014020	InterPro:IPR015425
InterPro:IPR029021	InterPro:IPR029023	PFAM:PF02181	PFAM:PF10409	PFscan:PS51181	PFscan:PS51182
PFscan:PS51444	PANTHER:PTHR23213	PANTHER:PTHR23213:SF271	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00498	SMART:SM01326
SUPFAM:SSF101447	SUPFAM:SSF49562	SUPFAM:SSF52799	InterPro:Tensin_C2-dom	InterPro:Tensin_phosphatase	UniParc:UPI000210977B
ArrayExpress:VIT_17s0000g06640	EnsemblPlantsGene:VIT_17s0000g06640	EnsemblPlants:VIT_17s0000g06640.t01	unigene:Vvi.12779	unigene:Vvi.17225	unigene:Vvi.21953
SEG:seg	:	:	:	:	:

Description

Formin-like protein [Source:UniProtKB/TrEMBL;Acc:F6GT55]

Coordinates

chr17:-:7163420..7182893

Molecular Weight (calculated)

146433.0 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.506

Length

1329 amino acids

Sequence
(BLAST)

0001: MALFRRFFYR KPPDRLLEIS ERVYVFDCCF STDVLEEDEY KVYMGGIVAQ LQDYFTDASF MVFNFREGDR RSQISDILSQ YDMTVMDYPR QYEGCPLLPL
0101: EMIHHFLRSS ESWLSLEGQQ NVLLMHCERG GWPVLAFMLA GLLLYRKQYN GEQRTLEMVY KQAPRELLHL LSPLNPQPSQ LRYLQYISRR NFGSDWPPSD
0201: TPLKLDYLIL RILPLFNGGR GCRPVVRVYG QDASAMANRS SKLLFSTSKT KKHVRHYQQA ECTVVKIGIH CRVQGDVVLE CIHLDEDLVR EEMMFRVMFH
0301: TAFVRSNILI LNRDEIDVLW DVKDQFPKDF KAEVLFSDAN AIGSICTTEI AGEDVNENES ASPEEFFEVE EIFSNAADAQ EVKGDYDIHA VQDIMMDDGN
0401: HKEVWKEDLD PQAFQDCASD DGNHKLDGRV DSNLPSAKAI ALGNRDDKLK SMVVVSAVLR NRETKEVTAD VCLDDGDKIL DSPVVVADEL KNIGTKVVAA
0501: DLSSKSGEME DNREDTADGI RNIETNVVIA DVSRKLELEN KCDREDITDG IKVIETNLVT ADVSSKLEDI ENKFDREGIA DGAKNIETNL VAADISSKSE
0601: EVENNRDRED IAMQKQIDNR VPQQKLNADS GRQKSDKLLP PAPRKQPAST AKPPAAESVI AKQKVKQQEP QSAAAKPTKQ KPLVSRWIPP NKGSYTNSMH
0701: ISYPPSRYNS APAALVITAL SKDSNADGNL ELVGFGVPSP PPPPPLPSMR GGPPPPPPPP VLGVPPPPPP PPLRGGPPAP PPPPSRGGPP PPPPPPSRGG
0801: PPPPPPPPLH GAPPPPPPPP RSGVPPPPPP PMRGAPPPPP PPMRGAPPPP PPPMGRAPPP PPPPMRGAPP PPFGGAPPPP PPPTGRGPPP PPPPGGRAPG
0901: PPAPPRPPGG GPPPPPPFAP RRSSLKPLHW SKVTRALQGS LWEELQRYGE PQIAPEFDVS ELETLFSATV PNSANSLGGK SGGRRKSVGS KADRVNLIDL
1001: RRANNTEIML TKVKMPLSDM MAAVLAMDES ILDVDQVENL IKFCPTKEEM ELLKAYTGDK EALGKCEQFF LELMKVPRVE SKLRVFSFKI QFGSQISDFR
1101: KSLNTVNSAC EEVRNSVKLK EIMKKILYLG NTLNQGTARG SAVGFKLDSL LKLTDTRASN SKMTLMHYLC KVLASKSPGL LDFHEDLVSL EAASKIQLKS
1201: LAEEMQAIMK GLEKVKQELN ASENDGPVSD IFRKTLKEFI GVAEGQVGSV TNLYSVVGRN ADALALYFGE DPVRCPFEQV TVTLLNFIRL FRKAHEENCK
1301: QAELERKKAQ KEVEMEKAKG INLTKKGVK

Best Arabidopsis Sequence Match ( AT5G07740.3 )
(BLAST)

0001: MALFRRFFYK KPPDRLLEIS ERVYVFDCCF SSDVMGEDEY KVYLGGIVAQ LQDHFPEASF MVFNFREGEQ RSQISDVLSQ YDMTVMDYPR QYESCPLLPL
0101: EMIHHFLRSS ESWLSLEGQQ NVLLMHCERG GWPVLAFMLS GLLLYRKQYH GEQKTLEMVH KQAPKELLHL LSPLNPQPSQ LRYLQYISRR NLGSDWPPSD
0201: TPLLLDCLIL RDLPHFEGKK GCRPILRVYG QDPKARTNRS SILLFSTLKT KKHTRLYQQE ECILVKLDIQ CRVQGDVVLE CIHLHDDLVS EEMVFRIMFH
0301: TAFVRANILM LQRDEMDILW DVKDQFPKEF KAEVLFSGAD AVVPPITTST LSDDENDFDM TSPEEFFEVE EIFSDVIDGP DHKRDSDSFV VVDTASDDSE
0401: GKEVWKGDVE PNAFLDCASD DSNHKHDMHA ETSTDPVKDI TVDDVQYRSD GKADSNIDSV KDIGIDDGDE QRKRRTVEAK ENDSSTVQTQ SKGDEESNDL
0501: ESMSQKTNTS LNKPISEKPQ ATLRKQVGAN AKPAAAGDSL KPKSKQQETQ GPNVRMAKPN AVSRWIPSNK GSYKDSMHVA YPPTRINSAP ASITTSLKDG
0601: KRATSPDGVI PKDAKTKYLR ASVSSPDMRS RAPICSSPDS SPKETPSSLP PASPHQAPPP LPSLTSEAKT VLHSSQAVAS PPPPPPPPPL PTYSHYQTSQ
0701: LPPPPPPPPP FSSERPNSGT VLPPPPPPPP PFSSERPNSG TVLPPPPPPP LPFSSERPNS GTVLPPPPSP PWKSVYASAL AIPAICSTSQ APTSSPTPPP
0801: PPPAYYSVGQ KSSDLQTSQL PSPPPPPPPP PFASVRRNSE TLLPPPPPPP PWKSLYASTF ETHEACSTSS SPPPPPPPPP FSPLNTTKAN DYILPPPPLP
0901: YTSIAPSPSV KILPLHGISS APSPPVKTAP PPPPPPPFSN AHSVLSPPPP SYGSPPPPPP PPPSYGSPPP PPPPPPSYGS PPPPPPPPPG YGSPPPPPPP
1001: PPSYGSPPPP PPPPFSHVSS IPPPPPPPPM HGGAPPPPPP PPMHGGAPPP PPPPPMHGGA PPPPPPPPMH GGAPPPPPPP MFGGAQPPPP PPMRGGAPPP
1101: PPPPMRGGAP PPPPPPMRGG APPPPPPPMH GGAPPPPPPP MRGGAPPPPP PPGGRGPGAP PPPPPPGGRA PGPPPPPGPR PPGGGPPPPP MLGARGAAVD
1201: PRGAGRGRGL PRPGFGSAAQ KKSSLKPLHW VKVTRALQGS LWDELQRHGE SQTPSEFDVS EIETLFSATV QKPADKSGSR RKSVGAKPEK VQLIDLRRAN
1301: NTEIMLTKVK MPLPDMMAAV LAMDESVLDV DQIENLIKFC PTKEEMELLK NYTGDKTTLG KCEQYFLELM KVPRVEAKLR VFSFKFQFGT QITEFKKSLN
1401: AVNSACEEVR SSQKLKEIMK KILYLGNTLN QGTARGAAVG FKLDSLSKLS DTRAANSKMT LMHYLCKVLA SKASVLLDFP KDLESLESAS KIQLKSLAEE
1501: MQAIIKGLEK LNQELTASES DGPVSDVFRK TLGDFISVAE TEVATVSSLY SVVGRNADAL AHYFGEDPNR CPFEQVTATL LNFIRLFKKA HEENVKQAEL
1601: EKKKALKEAE MEKAKGVNLT KKPVDDS

Arabidopsis Description

actin binding [Source:TAIR;Acc:AT5G07740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.