Factsheet for GSMUA_Achr5P13600_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31810.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT1G31810.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT1G31810.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P25960_001	Banana	mitochondrion	47.81	67.62
Os10t0119300-01	Rice	mitochondrion	76.77	54.68
PGSC0003DMT400079306	Potato	cytosol	72.39	53.35
Solyc08g075650.2.1	Tomato	cytosol	72.39	52.96
Bra038438.1-P	Field mustard	extracellular	52.53	51.49
CDY27130	Canola	cytosol, mitochondrion	53.87	40.71
GSMUA_Achr7P26410_001	Banana	endoplasmic reticulum, golgi	58.92	36.01
HORVU2Hr1G092520.9	Barley	cytosol	77.78	27.3
GSMUA_Achr3P13430_001	Banana	plasma membrane, plastid	60.27	26.17
TraesCS2B01G406800.1	Wheat	cytosol	78.11	24.89
KXG25260	Sorghum	cytosol	79.46	19.5
KRH62678	Soybean	cytosol	76.43	18.82
CDY49153	Canola	cytosol	66.33	18.8
KRH39699	Soybean	cytosol	76.09	18.43
CDY12361	Canola	cytosol	67.34	17.83
Bra023204.1-P	Field mustard	cytosol	65.99	16.85
VIT_02s0033g01360.t01	Wine grape	cytosol, nucleus, plasma membrane	74.07	16.83
AT1G31810.1	Thale cress	cytosol	69.7	16.83
GSMUA_Achr3P04690_001	Banana	cytosol	62.29	16.24
CDY12294	Canola	cytosol	66.33	16.16
GSMUA_Achr3P30260_001	Banana	mitochondrion, plasma membrane	56.9	15.62
GSMUA_Achr6P16780_001	Banana	cytosol	56.57	14.32
GSMUA_Achr7P26240_001	Banana	cytosol	15.82	14.2
GSMUA_Achr6P04430_001	Banana	cytosol	17.85	12.47
GSMUA_Achr4P07090_001	Banana	cytosol	18.86	12.17
GSMUA_Achr8P07370_001	Banana	endoplasmic reticulum, golgi	20.2	12.07
GSMUA_Achr7P18740_001	Banana	nucleus	20.2	11.76
GSMUA_Achr11P...	Banana	mitochondrion, plastid	16.16	11.16
GSMUA_Achr6P18370_001	Banana	nucleus	20.88	11.01
GSMUA_Achr4P32680_001	Banana	cytosol, mitochondrion	58.92	10.02
GSMUA_Achr5P25760_001	Banana	mitochondrion	14.14	9.57
GSMUA_Achr3P23040_001	Banana	cytosol, mitochondrion, plastid	20.88	9.55
GSMUA_Achr8P22610_001	Banana	plasma membrane	19.19	7.52
GSMUA_Achr10P...	Banana	plastid	20.2	7.47
GSMUA_Achr2P11400_001	Banana	endoplasmic reticulum, extracellular	17.51	7.19
GSMUA_Achr9P02450_001	Banana	plasma membrane, plastid	18.86	6.67
GSMUA_Achr2P14090_001	Banana	mitochondrion	14.81	6.62
GSMUA_Achr7P26420_001	Banana	cytosol, mitochondrion	18.86	6.02
GSMUA_Achr1P25970_001	Banana	cytosol	14.14	5.63
GSMUA_Achr7P23740_001	Banana	plastid	20.2	5.0
KRH15653	Soybean	cytosol	17.51	3.28
Solyc08g075670.1.1	Tomato	cytosol	5.39	3.2
GSMUA_Achr1P25980_001	Banana	plasma membrane	1.68	1.77
GSMUA_Achr3P13420_001	Banana	cytosol	2.69	1.29
GSMUA_Achr5P13590_001	Banana	cytosol	3.37	1.09

Protein Annotations

EnsemblPlants:GSMUA_Achr5P13600_001	EnsemblPlants:GSMUA_Achr5T13600_001	EnsemblPlantsGene:GSMUA_Achr5G13600_001	Gene3D:1.20.58.2220	InterPro:FH2_Formin	InterPro:IPR015425
ncoils:Coil	PANTHER:PTHR23213	PANTHER:PTHR23213:SF271	PFAM:PF02181	PFscan:PS51444	SEG:seg
SignalP:SignalP-noTM	SMART:SM00498	SUPFAM:SSF101447	UniParc:UPI000296D828	UniProt:M0SY89	MapMan:20.2.2.6.2

Description

Formin-like protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G13600_001]

Coordinates

chr5:+:9778889..9788786

Molecular Weight (calculated)

33829.9 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.179

Length

297 amino acids

Sequence
(BLAST)

001: MLPFFFHFFS FFLISQNYTG NKEMLGRCEQ FFLELMKVPR VESKLRVFSF RITFSTQVNE LRTNLNAIND ASREVKESLK LRQVMQTILT LGNALNQGTA
101: RGSAVGFRLD SLLKLSDTRA RNNKMTLMHY LCKLLAEKMP ELLDFDKDLI HLEAASKIQL KLVAEEMQAV SKGLEKVEQE LTASESDGDI SVGFRMALKG
201: FLHTAEADVR SLTSLYSEVG RNADSLSQYF GEDPARCPFE QVTSILVVFV NMFNKSREEN ARNAEAEKKK IVLCDEMEML FDGKQSFWTG EAIAFCK

Best Arabidopsis Sequence Match ( AT1G31810.1 )
(BLAST)

0001: MSLLSRFFYK RPPDGLLEFA DRVYVFDSCF CTEVLADSLY QIFLHEVIND LHEEFPESSF LAFNFREGEK KSVFAETLCE YDVTVLEYPR QYEGCPMLPL
0101: SLIQHFLRVC ESWLARGNRQ DVILLHCERG GWPLLAFILA SFLIFRKVHS GERRTLEIVH REAPKGLLQL LSPLNPFPSQ LRYLQYVARR NINSEWPPPE
0201: RALSLDCVII RGIPNFDSQH GCRPIIRIFG RNYSSKSGLS TEMVYSMSDK KKPLRHYRQA ECDVIKIDIQ CWVQGDVVLE CVHMDLDPER EVMMFRVMFN
0301: TAFIRSNILM LNSDNLDILW EAKDHYPKGF RAEVLFGEVE NASPQKVPTP IVNGDETGGL PIEAFSRVQE LFSGVDLAEN GDDAALWLLK QLAAINDAKE
0401: FTRFRHKGSF YFNSPDSEEE TNTSSAADSS DEGFEAIQRP RIHIPFDNDD TDDITLSVAH ESSEEPHEFS HHHHHEIPAK DSVDNPLNLP SDPPSSGDHV
0501: TLLPPPPPPP PPPLFTSTTS FSPSQPPPPP PPPPLFMSTT SFSPSQPPPP PPPPPLFTST TSFSPSQPPP PPPLPSFSNR DPLTTLHQPI NKTPPPPPPP
0601: PPPLPSRSIP PPLAQPPPPR PPPPPPPPPS SRSIPSPSAP PPPPPPPPSF GSTGNKRQAQ PPPPPPPPPP TRIPAAKCAP PPPPPPPTSH SGSIRVGPPS
0701: TPPPPPPPPP KANISNAPKP PAPPPLPPSS TRLGAPPPPP PPPLSKTPAP PPPPLSKTPV PPPPPGLGRG TSSGPPPLGA KGSNAPPPPP PAGRGRASLG
0801: LGRGRGVSVP TAAPKKTALK PLHWSKVTRA AKGSLWADTQ KQENQPRAPE IDISELESLF SAVSDTTAKK STGRRGSSIS KPEKVQLVDL RRANNCEIML
0901: TKIKIPLPDM LSAVLALDSL ALDIDQVENL IKFCPTKEEM ELLRNYTGDK EMLGKCEQFF MELMKVPRIE AKLRVFGFKI TFASQVEELK SCLNTINAAT
1001: KEVKESAKLR QIMQTILTLG NALNQGTARG SAVGFKLDSL LKLSDTRARN NKMTLMHYLC KLVGEKMPEL LDFANDLVHL EAASKIELKT LAEEMQAATK
1101: GLEKVEQELM ASENDGAISL GFRKVLKEFL DMADEEVKTL ASLYSEVGRN ADSLSHYFGE DPARCPFEQV TKILTLFMKT FIKSREENEK QAEAEKKKLE
1201: KEAIKEKSAT KKDGVDNDND LIQQIHRHRT

Arabidopsis Description

FH14Formin-like protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.