Factsheet for GSMUA_Achr1P25970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G32400.2	Thale cress	cytosol	20.78	31.31
GSMUA_Achr7P26410_001	Banana	endoplasmic reticulum, golgi	19.57	30.04
GSMUA_Achr3P13430_001	Banana	plasma membrane, plastid	25.6	27.92
GSMUA_Achr3P13420_001	Banana	cytosol	23.06	27.74
CDY34742	Canola	cytosol	40.35	26.8
CDX76779	Canola	cytosol	39.81	26.59
Bra007822.1-P	Field mustard	cytosol	39.28	26.21
AT2G25050.1	Thale cress	cytosol	40.21	25.68
GSMUA_Achr3P04690_001	Banana	cytosol	39.14	25.64
GSMUA_Achr5P13590_001	Banana	cytosol	28.28	22.93
VIT_04s0008g06530.t01	Wine grape	cytosol, nucleus, plasma membrane	41.55	21.06
KRH05363	Soybean	cytosol	41.29	21.04
GSMUA_Achr6P16780_001	Banana	cytosol	31.5	20.03
GSMUA_Achr3P30260_001	Banana	mitochondrion, plasma membrane	28.15	19.41
GSMUA_Achr4P32680_001	Banana	cytosol, mitochondrion	34.05	14.55
GSMUA_Achr5P13600_001	Banana	extracellular	5.63	14.14
GSMUA_Achr7P18740_001	Banana	nucleus	8.31	12.16
GSMUA_Achr7P26420_001	Banana	cytosol, mitochondrion	14.88	11.92
GSMUA_Achr11P...	Banana	mitochondrion, plastid	6.84	11.86
GSMUA_Achr7P26240_001	Banana	cytosol	5.23	11.78
GSMUA_Achr5P25760_001	Banana	mitochondrion	6.3	10.71
GSMUA_Achr2P11400_001	Banana	endoplasmic reticulum, extracellular	10.32	10.65
GSMUA_Achr6P18370_001	Banana	nucleus	7.91	10.48
GSMUA_Achr10P...	Banana	plastid	11.26	10.46
GSMUA_Achr2P14090_001	Banana	mitochondrion	8.71	9.77
GSMUA_Achr9P02450_001	Banana	plasma membrane, plastid	10.99	9.77
GSMUA_Achr8P07370_001	Banana	endoplasmic reticulum, golgi	6.43	9.66
GSMUA_Achr4P07090_001	Banana	cytosol	5.63	9.13
GSMUA_Achr6P04430_001	Banana	cytosol	5.09	8.94
GSMUA_Achr3P23040_001	Banana	cytosol, mitochondrion, plastid	7.51	8.63
GSMUA_Achr8P22610_001	Banana	plasma membrane	8.58	8.44
GSMUA_Achr7P23740_001	Banana	plastid	10.32	6.42
GSMUA_Achr1P25980_001	Banana	plasma membrane	1.47	3.89
GSMUA_Achr1P25960_001	Banana	mitochondrion	0.54	1.9

Protein Annotations

EnsemblPlants:GSMUA_Achr1P25970_001	EnsemblPlants:GSMUA_Achr1T25970_001	EnsemblPlantsGene:GSMUA_Achr1G25970_001	Gene3D:1.20.58.2220	Gene3D:2.60.40.1110	InterPro:FH2_Formin
InterPro:IPR014020	InterPro:IPR015425	InterPro:Tensin_C2-dom	PANTHER:PTHR23213	PANTHER:PTHR23213:SF271	PFAM:PF02181
PFAM:PF10409	PFscan:PS51182	PFscan:PS51444	SEG:seg	SMART:SM01326	SUPFAM:SSF101447
SUPFAM:SSF49562	UniParc:UPI000294ACAC	UniProt:M0S354	MapMan:20.2.2.6.2	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G25970_001]

Coordinates

chr1:-:20565189..20569757

Molecular Weight (calculated)

81265.5 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.373

Length

746 amino acids

Sequence
(BLAST)

001: MLKLISMTED CELVKIDIHC HIQGDVVLEC ISLDEDLERE VMMFRVMFNT AFIRSNILML DRDAIDILWD SKDRFLKDFR VEVILSEMDA ANSLTLLEFT
101: SGEEKEGLPV EAFAKVQEMF NNLDWLETKA DAATKVLQQI TSSKNLQEKL DAVSPQKLEA DVMLTKSSTD VLHEKVQSGE TNDRNKKPLP SSPKNLPFPL
201: NRSSDSVTKN QNTELHGLQI SSHQPSQIKI ISQRIPASRS TPVFSSNSLS GSHVTVSRYH SAPSALGIMA LLHDHAEPDS SEVTHSTKLA SSLSTSSAFG
301: SNISLETAHG LSSSGSQLTS SASYGKKTSP VPAEVPSSPA WKFSTSASHT FIPSLPSHCG IPSQSNDKSI SIPPPPPPPF KGTSLAPTSA NLEKPASATD
401: ACQALSSSIT SKSVPSPPPP PSMPSLSPHT NLLPLRKTDD TAISSKHSGD ITTKSSSAPP VPPPPLPPSS MKNVTALNSS GGRGTASEVI PPPPPNGMSS
501: LSGGRGRGLA RMTNSRNMQL NQLSSKKANL KPLHWIKVTR AVQGSLWAES QNLDEFSKAP EFDMSELESL FSAVVPNSDH RGSGSKSSGR SMGPKSEKVH
601: LSSYKELFCH ISNYYLCLQI DLRRANNCEI MLTKVKMPLN DLMSSVLALD DSMLDVDQID NLIKFCPTKE EMELLKGYNG DKENLGKCEQ YFLELMKVPR
701: VESKLRVFSF KIQFRSQVAD LKGNLNIVNS TAQEASPFFA NFQLTD

Best Arabidopsis Sequence Match ( AT3G32400.1 )
(BLAST)

001: MELLSSIATE GPPPPPPPPL LQPHHSALSS SPLPPPLPPK KLLATTNTPP PPPPPLHSNS QMGAPTSSLV LKSPHNLKGQ GQTRKANLKP YHWLKLTRAV
101: QGSLWAEAQK SDEAATAPDF DISEIEKLFS AVNLSSNSEN NGGKSGRRAR PKVEKVQLIE LKRAYNCEIM LSKVKIPLPD LMSSVLALDE SVIDVDQVDN
201: LIKFCPTKEE AELLKGFIGN KETLGRCEQF FLELLKVPRV ETKLRVFSFK IQFHSQVTDL RRGLNTIHSA TNEASRFFVQ IVRGSTKLKR IMQTILSLGN
301: ALNHGTARGS AIGFHLDSLL KLTDTRSRNI FIFVLAEKLP GLLNFPKDMV SLEAATNIQL KYLAEEMQAT SKGLEKVVQE FTASETDCQI SKHFHMNLKE
401: FLSVAEGEVR SLASLYSTVG GSADALALYF GEDPARVPFE QVVSTLQNFV RIFVRSHEEN CKQVEFEKKR AQKEAENEKL KKGVYNEN

Arabidopsis Description

FH17Formin-like protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH02]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.