Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035803.1-P | Field mustard | cytosol | 87.29 | 88.03 |
| CDY25398 | Canola | cytosol | 87.29 | 88.03 |
| CDY29803 | Canola | cytosol | 86.44 | 87.18 |
| VIT_09s0054g00730.t01 | Wine grape | mitochondrion | 42.37 | 36.5 |
| VIT_09s0054g00670.t01 | Wine grape | mitochondrion | 41.53 | 34.75 |
| TraesCS7D01G411000.1 | Wheat | mitochondrion | 34.75 | 33.33 |
| TraesCS7B01G318100.1 | Wheat | mitochondrion | 33.9 | 32.79 |
| TraesCS7A01G418000.1 | Wheat | mitochondrion | 33.9 | 32.52 |
| Zm00001d014682_P001 | Maize | mitochondrion | 33.9 | 30.77 |
| Os02t0143300-00 | Rice | mitochondrion | 30.51 | 29.51 |
| EER90331 | Sorghum | mitochondrion | 33.05 | 29.1 |
| KRH44682 | Soybean | plastid | 33.9 | 28.99 |
| Zm00001d004384_P001 | Maize | mitochondrion | 31.36 | 28.24 |
| TraesCS6A01G115600.1 | Wheat | cytosol | 28.81 | 27.2 |
| TraesCS6B01G143400.1 | Wheat | cytosol | 28.81 | 27.2 |
| TraesCS6D01G104400.1 | Wheat | cytosol | 28.81 | 27.2 |
| GSMUA_Achr5P24140_001 | Banana | extracellular, plastid | 34.75 | 26.8 |
| HORVU6Hr1G020840.1 | Barley | cytosol | 27.97 | 26.19 |
| AT2G36210.1 | Thale cress | mitochondrion | 28.81 | 25.19 |
| AT3G43120.1 | Thale cress | cytosol | 32.2 | 23.75 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 34.75 | 23.03 |
| OQU81155 | Sorghum | plastid | 33.05 | 22.03 |
| HORVU7Hr1G096870.1 | Barley | plastid | 33.9 | 21.98 |
| AT5G20810.2 | Thale cress | cytosol | 34.75 | 21.58 |
| AT4G31320.1 | Thale cress | cytosol | 33.05 | 20.63 |
| EES04503 | Sorghum | plastid | 32.2 | 19.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821566 | ProteinID:AEE76349.1 | EMBL:AK118282 | ArrayExpress:AT3G20220 | EnsemblPlantsGene:AT3G20220 |
| RefSeq:AT3G20220 | TAIR:AT3G20220 | RefSeq:AT3G20220-TAIR-G | EnsemblPlants:AT3G20220.1 | TAIR:AT3G20220.1 | ProteinID:BAB01881.1 |
| EMBL:BT005139 | GO:GO:0003674 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 | RefSeq:NP_188657.1 |
| PFAM:PF02519 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31929 |
| PANTHER:PTHR31929:SF25 | UniProt:Q9LJX7 | InterPro:SAUR_fam | UniParc:UPI000000C55B | : | : |
Description
SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:Q9LJX7]
Coordinates
chr3:+:7054828..7055456
Molecular Weight (calculated)
13868.5 Da
IEP (calculated)
6.788
GRAVY (calculated)
-0.750
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MISLSFIVRL ANQENRRNRR YETNIKDRLV SGELSDGSRP ARDQNGVPRG HLAVYVGREE RQRFVIPTKY LQYPEFRSLM DEVADEFGYD HEGGIHIPCE
101: ESVFEEILIR YMSCDKKK
101: ESVFEEILIR YMSCDKKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.