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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY40303 Canola plastid 96.9 76.84
Bra009640.1-P Field mustard plastid 96.38 71.59
AT5G01490.1 Thale cress plastid 80.1 68.28
GSMUA_Achr4P06590_001 Banana cytosol, golgi, peroxisome 51.42 53.78
TraesCS2A01G444600.1 Wheat plasma membrane 51.94 46.21
CDY29050 Canola golgi, plasma membrane, plastid 50.13 45.65
CDX90630 Canola golgi, peroxisome, plasma membrane, plastid 53.49 45.0
HORVU2Hr1G102840.16 Barley endoplasmic reticulum, plasma membrane 52.2 44.4
PGSC0003DMT400030772 Potato plasma membrane, plastid 52.2 44.3
TraesCS2D01G443700.2 Wheat plasma membrane 50.13 43.89
CDX91434 Canola plasma membrane 52.45 43.66
CDX93324 Canola plasma membrane 52.45 43.66
CDY18402 Canola plasma membrane 52.45 43.66
CDX74903 Canola golgi, peroxisome, plasma membrane, plastid 52.45 43.66
TraesCS2B01G465600.1 Wheat plastid 51.68 43.48
Solyc09g005260.2.1 Tomato plastid 50.65 43.17
GSMUA_Achr3P29210_001 Banana golgi, peroxisome, plasma membrane 50.9 43.01
Os05t0594200-01 Rice plastid 50.13 42.83
TraesCS3A01G202800.1 Wheat plastid 49.61 41.56
Os01t0557500-01 Rice vacuole 48.32 41.46
TraesCS3D01G206400.1 Wheat plastid 49.35 41.34
HORVU3Hr1G049060.8 Barley endoplasmic reticulum, peroxisome, plasma membrane, plastid 49.35 40.3
Zm00001d044533_P003 Maize golgi, mitochondrion, peroxisome, plasma membrane, plastid 47.29 39.61
Zm00001d009397_P001 Maize endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 9.82 39.58
GSMUA_Achr8P19620_001 Banana plasma membrane 42.12 39.28
KXG22713 Sorghum plasma membrane 49.87 38.45
Zm00001d009763_P001 Maize cytosol, mitochondrion, plasma membrane, plastid 50.39 37.79
Os02t0314300-00 Rice cytosol, peroxisome, vacuole 41.86 36.0
EES04904 Sorghum cytosol, peroxisome, vacuole 40.83 34.5
OQU86993 Sorghum plasma membrane 27.39 34.19
CDY10539 Canola plasma membrane 35.4 33.33
CDY23589 Canola golgi, peroxisome, plasma membrane 36.18 32.94
CDY42379 Canola plasma membrane 34.88 32.85
CDY24195 Canola golgi, peroxisome, plasma membrane 36.69 32.35
CDY43356 Canola golgi, peroxisome, plasma membrane 36.43 31.9
CDY44007 Canola cytosol, peroxisome, plasma membrane 35.92 31.59
CDX75703 Canola peroxisome 36.18 30.43
CDY26090 Canola plasma membrane 34.63 30.39
CDX82545 Canola mitochondrion 36.18 28.0
Protein Annotations
Gene3D:1.20.1420.30Gene3D:1.20.58.1130MapMan:24.2.9.1.1GO:A0A078FBY5UniProt:A0A078FBY5InterPro:CAX
EnsemblPlants:CDY10497ProteinID:CDY10497ProteinID:CDY10497.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0006816GO:GO:0008150GO:GO:0015369GO:GO:0016020GO:GO:0016021
GO:GO:0055085GO:GO:0070588EnsemblPlantsGene:GSBRNA2T00032436001InterPro:NaCa_ExmembPFAM:PF01699PANTHER:PTHR31503
PANTHER:PTHR31503:SF1TIGRFAMs:TIGR00378TMHMM:TMhelixUniParc:UPI0004EF16BASEG:seg:
Description
BnaCnng03980DBnaCnng03980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBY5]
Coordinates
chrLK032003:+:849770..851737
Molecular Weight (calculated)
42526.3 Da
IEP (calculated)
7.182
GRAVY (calculated)
0.399
Length
387 amino acids
Sequence
(BLAST)
001: MSLITTEASP SLSLIENGGG SDKRTAELSR SNRRTVQNLS ATSLMRNRSD LKLISRVRWE FMKRMLTNLQ EVLLGTKLFL LFPAVPLAVV AHRYGCPRAW
101: VFALSLLGLI PLAERISFLT EQIAFHTGPT VGGLMNATCG NATEMIIAIL AVGQRKMRIV KLSLLGSILS NLLFVLGTSL FFGGLSNLRK HQSFDRRQGD
201: MNCILLFLAL LCHTLPMILR FATEAAGGSA TNATNVLVVH PTRNEDGSDV LVLSRASSFL MLFAYLAFLI FHLFSSSLTP PPPPPPPQRE EEEEDVYDDN
301: VSDKEEEEAV IGMWSAILWL ITMTLLVALL SDYLVSTIQD AADSWGLSVA FIGIILLPIV GNAAEHAGAV IFAFRNKLVR LYIITSF
Best Arabidopsis Sequence Match ( AT5G01490.1 )
(BLAST)
001: MSSISTESSS NLSLLENGGG GSDKPTAETS RRVRRTVSAS SLIRKRSDLK LISRVRWEFM RRILTNLQEV LLGTKLFILF PAVPLAVVAH RYDCPRAWVF
101: ALSLLGLTPL AERISFLTEQ IAFHTGPTVG GLMNATCGNA TEMIIAILAV GQRKMRIVKL SLLGSILSNL LFVLGTSLFL GGISNLRKHQ SFDPRQGDMN
201: SMLLYLALLC QTLPMIMRFT MEAEEYDGSD VVVLSRASSF VMLIAYLAFL IFHLFSSHLS PPPPPLPQRE DVHDDDVSDK EEEGAVIGMW SAIFWLIIMT
301: LLVALLSDYL VSTIQDAADS WGLSVGFIGI ILLPIVGNAA EHAGAVIFAF RNKLDITLGI ALGSATQIAL FVVPVTVLVA WTMGIEMDLN FNLLETACFA
401: LSILVTSLVL QDGTSNYMKG LVLLLCYVVI AACFFVSNSP STETNTTNHT ITKR
Arabidopsis Description
CAX4cation exchanger 4 [Source:TAIR;Acc:AT5G01490]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.