CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plasma membrane, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10497	Canola	plastid	76.84	96.9
Bra009640.1-P	Field mustard	plastid	95.9	89.83
AT5G01490.1	Thale cress	plastid	81.56	87.67
TraesCS2A01G444600.1	Wheat	plasma membrane	53.89	60.46
CDY29050	Canola	golgi, plasma membrane, plastid	52.05	59.76
HORVU2Hr1G102840.16	Barley	endoplasmic reticulum, plasma membrane	54.1	58.02
TraesCS2D01G443700.2	Wheat	plasma membrane	52.46	57.92
PGSC0003DMT400030772	Potato	plasma membrane, plastid	54.1	57.89
CDX90630	Canola	golgi, peroxisome, plasma membrane, plastid	54.51	57.83
TraesCS2B01G465600.1	Wheat	plastid	53.69	56.96
Solyc09g005260.2.1	Tomato	plastid	52.87	56.83
CDX74903	Canola	golgi, peroxisome, plasma membrane, plastid	54.1	56.77
CDX93324	Canola	plasma membrane	53.89	56.56
CDY18402	Canola	plasma membrane	53.89	56.56
CDX91434	Canola	plasma membrane	53.69	56.34
GSMUA_Achr3P29210_001	Banana	golgi, peroxisome, plasma membrane	52.87	56.33
Os05t0594200-01	Rice	plastid	52.25	56.29
GSMUA_Achr4P06590_001	Banana	cytosol, golgi, peroxisome	42.01	55.41
TraesCS3A01G202800.1	Wheat	plastid	52.05	54.98
Os01t0557500-01	Rice	vacuole	50.61	54.77
TraesCS3D01G206400.1	Wheat	plastid	51.84	54.76
OQU86993	Sorghum	plasma membrane	34.02	53.55
Zm00001d044533_P003	Maize	golgi, mitochondrion, peroxisome, plasma membrane, plastid	49.59	52.38
GSMUA_Achr8P19620_001	Banana	plasma membrane	44.06	51.81
HORVU3Hr1G049060.8	Barley	endoplasmic reticulum, peroxisome, plasma membrane, plastid	49.18	50.63
KXG22713	Sorghum	plasma membrane	51.84	50.4
Zm00001d009763_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	52.05	49.22
Os02t0314300-00	Rice	cytosol, peroxisome, vacuole	43.85	47.56
EES04904	Sorghum	cytosol, peroxisome, vacuole	43.65	46.51
CDY10539	Canola	plasma membrane	37.3	44.28
CDY23589	Canola	golgi, peroxisome, plasma membrane	38.52	44.24
CDY42379	Canola	plasma membrane	37.09	44.04
CDY24195	Canola	golgi, peroxisome, plasma membrane	38.32	42.6
CDY43356	Canola	golgi, peroxisome, plasma membrane	38.52	42.53
CDY44007	Canola	cytosol, peroxisome, plasma membrane	38.32	42.5
CDX75703	Canola	peroxisome	38.52	40.87
CDY26090	Canola	plasma membrane	36.89	40.82
Zm00001d009397_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	7.79	39.58
CDX82545	Canola	mitochondrion	38.52	37.6

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	GO:A0A078HU62	UniProt:A0A078HU62	InterPro:CAX
EnsemblPlants:CDY40303	ProteinID:CDY40303	ProteinID:CDY40303.1	InterPro:CaH_exchang	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0006816	GO:GO:0008150
GO:GO:0008324	GO:GO:0015369	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0070588
GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00069480001	InterPro:NaCa_Exmemb	PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF1
TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846	TMHMM:TMhelix	UniParc:UPI0004EE0A6D	SEG:seg	:

Description

BnaA10g27650DBnaA10g27650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU62]

Coordinates

chrLK032468:-:23731..27884

Molecular Weight (calculated)

53280.5 Da

IEP (calculated)

6.244

GRAVY (calculated)

0.491

Length

488 amino acids

Sequence
(BLAST)

001: MSLITTEASP SLSLIENGGG SDKRTAELSR SNRRTVQNLS ATSLMRNRSD LKLISRVRWE FMRTMLTNLQ EVLLGTKLFL LFPAVPLAVV AHRYGCPRAW
101: VFALSLLGLI PLAERISFLT EQIAFHTGPT VGGLMNATCG NATEMIIAIL AVGQRKMRIV KLSLLGSILS NLLFVLGTSL FFGGLSNLRK HQSFDRRQGD
201: MNCILLFLAL LCHTLPMILR FATEAAGGSA TNATNVLVVH PTRSEDGSDV LVLSRASSFL MLFAYLAFLI FHLFSSSLTP PPPPPQREEE EEEEDVYDDN
301: VSDKEEEEAV IGMWSAILWL ITMTLLVALL SDYLVSTIQD AADSWGLSVA FIGIILLPIV GNAAEHAGAV IFAFRNKLDI TLGIALGSAT QIALFVVPVT
401: VLVAWAMGIE MDLNFNLLET ACLALSILVT SFTLQDGTSN YMKGLVLLLC YIVIAVCFFV SNSPSAETST TNHTLTKRYV MVKVAPHK

Best Arabidopsis Sequence Match ( AT5G01490.1 )
(BLAST)

001: MSSISTESSS NLSLLENGGG GSDKPTAETS RRVRRTVSAS SLIRKRSDLK LISRVRWEFM RRILTNLQEV LLGTKLFILF PAVPLAVVAH RYDCPRAWVF
101: ALSLLGLTPL AERISFLTEQ IAFHTGPTVG GLMNATCGNA TEMIIAILAV GQRKMRIVKL SLLGSILSNL LFVLGTSLFL GGISNLRKHQ SFDPRQGDMN
201: SMLLYLALLC QTLPMIMRFT MEAEEYDGSD VVVLSRASSF VMLIAYLAFL IFHLFSSHLS PPPPPLPQRE DVHDDDVSDK EEEGAVIGMW SAIFWLIIMT
301: LLVALLSDYL VSTIQDAADS WGLSVGFIGI ILLPIVGNAA EHAGAVIFAF RNKLDITLGI ALGSATQIAL FVVPVTVLVA WTMGIEMDLN FNLLETACFA
401: LSILVTSLVL QDGTSNYMKG LVLLLCYVVI AACFFVSNSP STETNTTNHT ITKR

Arabidopsis Description

CAX4cation exchanger 4 [Source:TAIR;Acc:AT5G01490]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.