Factsheet for GSMUA_Achr5P24740_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07950_001	Banana	extracellular	71.33	76.69
PGSC0003DMT400059279	Potato	cytosol	48.25	57.98
TraesCS2A01G252300.1	Wheat	extracellular	64.34	53.18
TraesCS2B01G272100.1	Wheat	extracellular	63.64	52.6
TraesCS2D01G253000.1	Wheat	extracellular	62.24	51.45
CDY56715	Canola	cytosol	40.56	51.33
Bra034233.1-P	Field mustard	cytosol	39.16	50.91
Zm00001d007864_P001	Maize	extracellular	62.24	50.28
OQU88437	Sorghum	extracellular	61.54	50.0
KRH59215	Soybean	extracellular	59.44	46.96
Solyc04g058080.2.1	Tomato	extracellular	56.64	45.51
CDY21992	Canola	cytosol	42.66	42.96
CDY48582	Canola	cytosol	42.66	42.96
VIT_10s0003g04340.t01	Wine grape	plasma membrane	58.04	40.1
AT4G05430.3	Thale cress	extracellular, plasma membrane	46.85	39.88
GSMUA_Achr11P...	Banana	extracellular	30.07	36.13
GSMUA_Achr3P16040_001	Banana	mitochondrion	34.97	35.71
GSMUA_Achr9P09230_001	Banana	extracellular	28.67	33.88
GSMUA_Achr9P07170_001	Banana	extracellular	41.26	32.96
GSMUA_Achr7P26650_001	Banana	extracellular	26.57	32.76
GSMUA_Achr3P31190_001	Banana	cytosol, nucleus, plastid	33.57	32.21
GSMUA_Achr6P27540_001	Banana	extracellular	38.46	29.89
GSMUA_Achr8P28170_001	Banana	extracellular	32.17	29.68
GSMUA_Achr10P...	Banana	extracellular	33.57	27.12
GSMUA_Achr5P08900_001	Banana	extracellular	32.17	24.21
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	32.17	24.08
GSMUA_Achr4P23440_001	Banana	cytosol	25.17	24.0
GSMUA_Achr1P04440_001	Banana	endoplasmic reticulum, extracellular, vacuole	32.17	23.96
GSMUA_Achr8P33530_001	Banana	cytosol, extracellular, plastid, vacuole	32.87	22.82
GSMUA_Achr4P32790_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	27.97	22.22
GSMUA_Achr9P07140_001	Banana	extracellular	28.67	22.04
GSMUA_Achr4P14960_001	Banana	endoplasmic reticulum, extracellular	35.66	21.43
GSMUA_Achr4P10810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	32.87	19.34
GSMUA_Achr6P00220_001	Banana	nucleus	36.36	17.16
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, vacuole	32.17	12.99
GSMUA_Achr2P02010_001	Banana	cytosol	39.86	12.15
GSMUA_Achr11P...	Banana	extracellular, plastid, vacuole	39.86	10.82

Protein Annotations

EnsemblPlants:GSMUA_Achr5P24740_001	EnsemblPlants:GSMUA_Achr5T24740_001	EnsemblPlantsGene:GSMUA_Achr5G24740_001	InterPro:X8	PANTHER:PTHR32227	PANTHER:PTHR32227:SF118
PFAM:PF07983	SMART:SM00768	UniParc:UPI0002948496	UniProt:M0T1E9	MapMan:35.1	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G24740_001]

Coordinates

chr5:+:26020719..26021351

Molecular Weight (calculated)

15408.9 Da

IEP (calculated)

4.433

GRAVY (calculated)

-0.210

Length

143 amino acids

Sequence
(BLAST)

001: MKSKEWIIIY ELLMVECYLV VAMGGRLQQK AESTIPTPTF SPPEANRTGI ESTTWCVAHP GASQFDLENA LDWACGVGGA DCSSVQPGAA CYQPDTLLSH
101: ASYAFNSYYQ HNGNSDVACN FGGTATITSR DPSYGSCKYL SSE

Best Arabidopsis Sequence Match ( AT4G05430.3 )
(BLAST)

001: MRTQFWIFLL FLLLLNFFSQ AARPVMTIRP ESLVGPQGNT TFLEGTTWCV ARPGATQAEL QRALDWACGI GRVDCSVIER HGDCYEPDTI VSHASFAFNA
101: YYQTNGNNRI ACYFGGTATF TKINPSYGKC SYDASKSEVS TARSLSEYKA RWLLLMYIGV FSLISRRD

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:TAIR;Acc:AT4G05430]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.