Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034233.1-P | Field mustard | cytosol | 54.17 | 82.73 |
| CDY48582 | Canola | cytosol | 69.05 | 81.69 |
| CDY21992 | Canola | cytosol | 69.05 | 81.69 |
| CDY56715 | Canola | cytosol | 53.57 | 79.65 |
| PGSC0003DMT400059279 | Potato | cytosol | 41.67 | 58.82 |
| GSMUA_Achr7P07950_001 | Banana | extracellular | 41.07 | 51.88 |
| KRH59215 | Soybean | extracellular | 50.6 | 46.96 |
| GSMUA_Achr5P24740_001 | Banana | endoplasmic reticulum, extracellular | 39.88 | 46.85 |
| Solyc04g058080.2.1 | Tomato | extracellular | 47.62 | 44.94 |
| VIT_10s0003g04340.t01 | Wine grape | plasma membrane | 50.0 | 40.58 |
| TraesCS2D01G253000.1 | Wheat | extracellular | 41.67 | 40.46 |
| TraesCS2B01G272100.1 | Wheat | extracellular | 41.67 | 40.46 |
| TraesCS2A01G252300.1 | Wheat | extracellular | 41.67 | 40.46 |
| OQU88437 | Sorghum | extracellular | 41.67 | 39.77 |
| Zm00001d007864_P001 | Maize | extracellular | 41.67 | 39.55 |
| AT5G35740.1 | Thale cress | extracellular | 27.98 | 39.5 |
| AT2G04910.1 | Thale cress | extracellular | 23.21 | 31.45 |
| AT1G18650.1 | Thale cress | extracellular | 29.76 | 27.17 |
| AT2G03505.1 | Thale cress | extracellular | 26.19 | 26.19 |
| AT2G30933.1 | Thale cress | extracellular | 29.17 | 21.59 |
| AT5G61130.1 | Thale cress | extracellular | 24.4 | 20.4 |
| AT4G13600.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 27.98 | 20.35 |
| AT1G26450.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 22.02 | 18.78 |
| AT5G08000.2 | Thale cress | extracellular | 23.21 | 18.31 |
| AT1G13830.2 | Thale cress | mitochondrion, peroxisome, plastid, vacuole | 21.43 | 17.06 |
| AT3G58100.2 | Thale cress | cytosol | 25.6 | 16.8 |
| AT1G09460.1 | Thale cress | extracellular, vacuole | 32.74 | 16.67 |
| AT1G29380.1 | Thale cress | extracellular | 30.95 | 16.51 |
| AT1G69295.1 | Thale cress | extracellular | 20.83 | 15.77 |
| AT5G67460.1 | Thale cress | vacuole | 30.95 | 13.68 |
| AT1G79480.1 | Thale cress | extracellular | 25.0 | 10.58 |
Protein Annotations
| ArrayExpress:AT4G05430 | EnsemblPlants:AT4G05430.3 | EnsemblPlantsGene:AT4G05430 | EntrezGene:825891 | InterPro:X8 | PANTHER:PTHR32227 |
| PANTHER:PTHR32227:SF98 | PFAM:PF07983 | ProteinID:ANM66163.1 | RefSeq:AT4G05430 | RefSeq:AT4G05430-TAIR-G | RefSeq:NP_001328076.1 |
| SEG:seg | SignalP:SignalP-noTM | SMART:SM00768 | TAIR:AT4G05430 | TMHMM:TMhelix | UniParc:UPI00084842EC |
| UniProt:A0A1P8B3J8 | MapMan:35.1 | : | : | : | : |
Description
Carbohydrate-binding X8 domain superfamily protein [Source:TAIR;Acc:AT4G05430]
Coordinates
chr4:+:2753134..2754586
Molecular Weight (calculated)
18899.5 Da
IEP (calculated)
8.356
GRAVY (calculated)
-0.036
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTQFWIFLL FLLLLNFFSQ AARPVMTIRP ESLVGPQGNT TFLEGTTWCV ARPGATQAEL QRALDWACGI GRVDCSVIER HGDCYEPDTI VSHASFAFNA
101: YYQTNGNNRI ACYFGGTATF TKINPSYGKC SYDASKSEVS TARSLSEYKA RWLLLMYIGV FSLISRRD
101: YYQTNGNNRI ACYFGGTATF TKINPSYGKC SYDASKSEVS TARSLSEYKA RWLLLMYIGV FSLISRRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.