Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07353 | Canola | extracellular | 79.73 | 81.19 |
| CDY04273 | Canola | extracellular | 79.73 | 81.19 |
| Bra004003.1-P | Field mustard | extracellular | 79.73 | 81.19 |
| CDY54140 | Canola | extracellular | 75.23 | 79.9 |
| CDY50312 | Canola | extracellular | 76.13 | 78.6 |
| CDY40909 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 82.43 | 77.22 |
| Bra038314.1-P | Field mustard | mitochondrion | 71.62 | 70.35 |
| AT1G26450.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 55.41 | 62.44 |
| GSMUA_Achr4P23440_001 | Banana | cytosol | 28.83 | 42.67 |
| TraesCS6B01G138700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 35.59 | 39.9 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, vacuole | 34.23 | 39.79 |
| Solyc05g012380.2.1 | Tomato | extracellular | 36.04 | 39.6 |
| PGSC0003DMT400072939 | Potato | extracellular | 36.49 | 39.32 |
| GSMUA_Achr9P07140_001 | Banana | extracellular | 32.43 | 38.71 |
| TraesCS6A01G110400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 34.23 | 38.58 |
| GSMUA_Achr4P32790_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 31.08 | 38.33 |
| AT2G03505.1 | Thale cress | extracellular | 28.83 | 38.1 |
| TraesCS6D01G099100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 32.43 | 37.89 |
| AT1G18650.1 | Thale cress | extracellular | 31.08 | 37.5 |
| PGSC0003DMT400003054 | Potato | extracellular | 31.98 | 37.17 |
| Os03t0421800-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 31.08 | 36.7 |
| EER97492 | Sorghum | extracellular | 31.98 | 36.6 |
| GSMUA_Achr1P04440_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 31.53 | 36.46 |
| Zm00001d047293_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 31.98 | 36.22 |
| EER92116 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 31.98 | 36.04 |
| Solyc01g010310.2.1 | Tomato | extracellular | 30.63 | 35.98 |
| TraesCS2D01G185800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 31.53 | 35.35 |
| GSMUA_Achr7P26650_001 | Banana | extracellular | 18.47 | 35.34 |
| GSMUA_Achr5P08900_001 | Banana | extracellular | 30.18 | 35.26 |
| Zm00001d006776_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 31.53 | 35.18 |
| Zm00001d006777_P003 | Maize | endoplasmic reticulum, extracellular, vacuole | 31.53 | 35.18 |
| Os07t0600700-01 | Rice | extracellular | 30.63 | 35.05 |
| TraesCS2A01G177600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 31.53 | 35.0 |
| TraesCS2B01G204700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 31.98 | 34.63 |
| AT5G35740.1 | Thale cress | extracellular | 18.47 | 34.45 |
| Zm00001d022059_P001 | Maize | endoplasmic reticulum, extracellular | 30.63 | 34.34 |
| GSMUA_Achr8P28170_001 | Banana | extracellular | 23.87 | 34.19 |
| Zm00001d029539_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 30.63 | 34.0 |
| AT5G61130.1 | Thale cress | extracellular | 29.28 | 32.34 |
| Os03t0756300-01 | Rice | extracellular | 25.23 | 32.0 |
| HORVU1Hr1G077100.2 | Barley | endoplasmic reticulum, extracellular, vacuole | 30.18 | 31.75 |
| TraesCS3D01G299600.1 | Wheat | extracellular | 27.93 | 31.63 |
| TraesCS3A01G302400.1 | Wheat | extracellular | 27.93 | 31.63 |
| TraesCS1A01G332500.1 | Wheat | extracellular | 29.73 | 31.58 |
| Os01t0763900-01 | Rice | extracellular | 29.28 | 31.4 |
| TraesCS1B01G346200.2 | Wheat | endoplasmic reticulum, extracellular, vacuole | 29.28 | 31.1 |
| TraesCS5B01G398000.1 | Wheat | extracellular | 22.97 | 31.1 |
| TraesCS1D01G335200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 30.18 | 30.88 |
| AT1G13830.2 | Thale cress | mitochondrion, peroxisome, plastid, vacuole | 29.28 | 30.81 |
| AT2G04910.1 | Thale cress | extracellular | 17.12 | 30.65 |
| TraesCS5A01G393200.1 | Wheat | extracellular | 22.97 | 30.54 |
| TraesCS5B01G399400.1 | Wheat | extracellular | 21.62 | 30.38 |
| TraesCS5D01G403000.1 | Wheat | extracellular | 22.52 | 30.12 |
| HORVU6Hr1G019780.4 | Barley | endoplasmic reticulum, extracellular | 30.18 | 29.65 |
| OQU87600 | Sorghum | extracellular | 24.32 | 28.72 |
| Zm00001d043361_P001 | Maize | endoplasmic reticulum, extracellular | 24.32 | 28.72 |
| HORVU4Hr1G028360.1 | Barley | peroxisome, plastid | 15.77 | 27.78 |
| AT5G08000.2 | Thale cress | extracellular | 26.58 | 27.7 |
| GSMUA_Achr4P10810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 30.18 | 27.57 |
| Os05t0512600-01 | Rice | extracellular | 27.93 | 27.19 |
| Zm00001d010728_P005 | Maize | extracellular | 25.23 | 25.57 |
| Zm00001d038682_P001 | Maize | extracellular | 25.68 | 24.78 |
| EES18492 | Sorghum | extracellular | 24.77 | 24.02 |
| HORVU2Hr1G033470.1 | Barley | cytosol, plastid | 31.98 | 23.91 |
| AT4G13600.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 24.32 | 23.38 |
| TraesCS3B01G334200.1 | Wheat | golgi, nucleus, plasma membrane | 28.38 | 22.91 |
| Zm00001d013250_P003 | Maize | extracellular | 22.97 | 22.77 |
| HORVU3Hr1G074010.3 | Barley | cytosol, plastid | 28.38 | 21.65 |
| AT2G30933.1 | Thale cress | extracellular | 22.07 | 21.59 |
| TraesCS5A01G548300.1 | Wheat | plasma membrane | 18.47 | 20.92 |
| AT4G05430.3 | Thale cress | extracellular, plasma membrane | 15.77 | 20.83 |
| Zm00001d034062_P001 | Maize | cytosol, golgi, peroxisome | 21.17 | 19.26 |
| AT1G29380.1 | Thale cress | extracellular | 27.03 | 19.05 |
| AT1G09460.1 | Thale cress | extracellular, vacuole | 27.93 | 18.79 |
| KXG37528 | Sorghum | mitochondrion | 22.07 | 18.49 |
| HORVU5Hr1G096090.6 | Barley | plastid | 18.92 | 17.95 |
| AT3G58100.2 | Thale cress | cytosol | 17.12 | 14.84 |
| AT5G67460.1 | Thale cress | vacuole | 18.47 | 10.79 |
| AT1G79480.1 | Thale cress | extracellular | 18.02 | 10.08 |
Protein Annotations
| MapMan:35.1 | EntrezGene:843261 | ProteinID:AAG52501.1 | ProteinID:AEE34907.1 | EMBL:AF370153 | EMBL:AF412078 |
| EMBL:AK118559 | EMBL:AK175349 | EMBL:AK175595 | EMBL:AK175601 | EMBL:AK175695 | EMBL:AK175701 |
| EMBL:AK175748 | EMBL:AK175773 | EMBL:AK175814 | EMBL:AK175832 | EMBL:AK175835 | EMBL:AK175881 |
| EMBL:AK175916 | EMBL:AK176017 | EMBL:AK176076 | EMBL:AK176160 | EMBL:AK176590 | ArrayExpress:AT1G69295 |
| EnsemblPlantsGene:AT1G69295 | RefSeq:AT1G69295 | TAIR:AT1G69295 | RefSeq:AT1G69295-TAIR-G | EnsemblPlants:AT1G69295.1 | TAIR:AT1G69295.1 |
| EMBL:AY056376 | EMBL:AY059094 | EMBL:AY085640 | Unigene:At.21446 | GO:GO:0001872 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0009506 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0030054 | GO:GO:0030246 | GO:GO:0030247 |
| GO:GO:0031225 | GO:GO:0046658 | RefSeq:NP_564957.1 | Symbol:PDCB4 | PFAM:PF07983 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR32227 |
| PANTHER:PTHR32227:SF118 | UniProt:Q93V72 | SMART:SM00768 | SignalP:SignalP-noTM | UniParc:UPI00000A25D6 | InterPro:X8 |
| SEG:seg | : | : | : | : | : |
Description
PDCB4PLASMODESMATA CALLOSE-BINDING PROTEIN 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93V72]
Coordinates
chr1:-:26050143..26052567
Molecular Weight (calculated)
22077.7 Da
IEP (calculated)
5.710
GRAVY (calculated)
-0.196
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLLPLCLI ISMFTYSNAA YCLCKEGNEQ VLQKAIDYAC GNGADCTQIQ PTGACYQPNT VKNHCDVAVN SYYQKKASSG ATCDFNGAAS PSTTPPSTAS
101: NCLTGSSSSG TPTTGTPTTG TPTSGTPTTG TPTTGTPTTG TPTSGTPTSG FPNTGTPNTG TNTGMPNSNG MPTSSSSSVF PGTTLGPTGS GGLGDPNAGE
201: KLSVRTNTVV FLLTGVAAML VI
101: NCLTGSSSSG TPTTGTPTTG TPTSGTPTTG TPTTGTPTTG TPTSGTPTSG FPNTGTPNTG TNTGMPNSNG MPTSSSSSVF PGTTLGPTGS GGLGDPNAGE
201: KLSVRTNTVV FLLTGVAAML VI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.