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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 6
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 6
  • vacuole 6
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d047293_P001 Maize endoplasmic reticulum, extracellular, vacuole 87.82 88.27
Zm00001d029539_P001 Maize endoplasmic reticulum, extracellular, vacuole 82.23 81.0
Os03t0421800-01 Rice endoplasmic reticulum, extracellular, vacuole 64.47 67.55
TraesCS6D01G099100.1 Wheat endoplasmic reticulum, extracellular, vacuole 63.96 66.32
TraesCS6B01G138700.1 Wheat endoplasmic reticulum, extracellular, vacuole 63.96 63.64
TraesCS6A01G110400.1 Wheat endoplasmic reticulum, extracellular, vacuole 63.45 63.45
EER97492 Sorghum extracellular 55.33 56.19
KRH54678 Soybean extracellular, nucleus 26.4 46.85
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, vacuole 42.13 43.46
GSMUA_Achr9P07140_001 Banana extracellular 40.1 42.47
PGSC0003DMT400045877 Potato extracellular 22.84 42.06
GSMUA_Achr1P04440_001 Banana endoplasmic reticulum, extracellular, vacuole 40.61 41.67
GSMUA_Achr5P08900_001 Banana extracellular 38.58 40.0
GSMUA_Achr7P26650_001 Banana extracellular 23.35 39.66
VIT_17s0000g07260.t01 Wine grape extracellular 41.62 39.61
Solyc03g115200.2.1 Tomato extracellular 37.56 39.57
GSMUA_Achr8P28170_001 Banana extracellular 30.96 39.35
OQU87600 Sorghum extracellular 37.06 38.83
PGSC0003DMT400063348 Potato extracellular 36.04 38.38
CDY16115 Canola extracellular 29.95 38.06
CDX96707 Canola extracellular 35.53 37.84
CDX83826 Canola extracellular 35.03 37.5
CDY33795 Canola extracellular 34.01 37.43
Bra026880.1-P Field mustard extracellular 34.01 37.43
Bra026879.1-P Field mustard extracellular 26.9 37.32
CDY26741 Canola extracellular 35.03 37.1
Bra026878.1-P Field mustard extracellular 26.4 36.88
CDY16114 Canola extracellular 33.5 36.87
HORVU6Hr1G019780.4 Barley endoplasmic reticulum, extracellular 42.13 36.73
CDY19232 Canola extracellular 35.03 36.7
AT1G18650.1 Thale cress extracellular 33.5 35.87
KRG89485 Soybean extracellular 31.98 35.8
KRH50525 Soybean extracellular 32.99 35.52
CDY65418 Canola cytosol 26.4 35.37
KRH75030 Soybean extracellular 38.58 35.35
PGSC0003DMT400072939 Potato extracellular 36.55 34.95
CDY42854 Canola extracellular 34.52 34.87
CDY04273 Canola extracellular 38.58 34.86
Bra025116.1-P Field mustard extracellular 28.43 34.78
CDY51213 Canola extracellular 28.43 34.78
VIT_01s0011g00570.t01 Wine grape extracellular 34.01 34.72
KRH70882 Soybean extracellular 38.07 34.56
CDX98134 Canola extracellular 33.5 34.55
KRH03122 Soybean extracellular, nucleus 35.53 34.48
Bra004003.1-P Field mustard extracellular 38.07 34.4
CDY07353 Canola extracellular 38.07 34.4
Bra029334.1-P Field mustard extracellular 34.01 34.36
AT2G03505.1 Thale cress extracellular 28.93 33.93
Solyc05g012380.2.1 Tomato extracellular 34.52 33.66
CDY02987 Canola extracellular 27.41 33.54
EES18492 Sorghum extracellular 38.58 33.19
CDY16822 Canola extracellular 33.5 33.17
CDX87201 Canola extracellular 33.5 33.17
Bra019700.1-P Field mustard extracellular 32.99 32.99
PGSC0003DMT400003054 Potato extracellular 31.98 32.98
Bra035941.1-P Field mustard extracellular 32.99 32.66
CDY36415 Canola extracellular 32.49 32.65
CDY23085 Canola extracellular, plasma membrane, vacuole 31.98 32.64
CDY34558 Canola extracellular 28.43 32.56
CDX96880 Canola extracellular 28.43 32.56
Bra016724.1-P Field mustard extracellular 28.43 32.56
Solyc01g010310.2.1 Tomato extracellular 30.96 32.28
AT1G69295.1 Thale cress extracellular 36.04 31.98
EES05109 Sorghum extracellular, plasma membrane 30.96 31.77
GSMUA_Achr4P10810_001 Banana endoplasmic reticulum, nucleus, plasma membrane 39.09 31.69
CDY02169 Canola extracellular 30.96 31.44
AT5G61130.1 Thale cress extracellular 31.98 31.34
CDY54140 Canola extracellular 32.99 31.1
OQU76517 Sorghum extracellular 26.9 30.46
CDY40909 Canola endoplasmic reticulum, extracellular, plasma membrane 36.55 30.38
CDY50312 Canola extracellular 32.99 30.23
KRH56823 Soybean extracellular 32.49 30.05
CDY65205 Canola plasma membrane 29.95 29.8
CDY40247 Canola endoplasmic reticulum, extracellular, vacuole 29.44 29.59
Bra012458.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 29.44 29.59
AT1G26450.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 29.44 29.44
CDX69983 Canola extracellular 31.47 29.25
Bra009313.1-P Field mustard extracellular 31.47 29.25
AT5G08000.2 Thale cress extracellular 31.47 29.11
Bra012981.1-P Field mustard extracellular, vacuole 30.96 27.48
Bra038314.1-P Field mustard mitochondrion 31.47 27.43
CDX99038 Canola extracellular 31.98 26.81
AT1G13830.2 Thale cress mitochondrion, peroxisome, plastid, vacuole 27.92 26.07
OQU88437 Sorghum extracellular 21.32 23.86
KXG37528 Sorghum mitochondrion 30.96 23.02
Solyc04g005420.2.1 Tomato extracellular, vacuole 31.47 20.2
EES20007 Sorghum extracellular, vacuole 24.87 19.84
EER90180 Sorghum extracellular, plasma membrane 21.32 18.83
EES01128 Sorghum extracellular 28.93 18.39
CDY47016 Canola extracellular 32.99 17.47
KXG27714 Sorghum vacuole 25.89 14.78
KXG27096 Sorghum extracellular, vacuole 24.37 11.27
EER90586 Sorghum extracellular 27.92 8.94
KXG36188 Sorghum cytosol, endoplasmic reticulum, vacuole 23.35 8.49
Protein Annotations
MapMan:35.1EntrezGene:8066286UniProt:C5WWI8EnsemblPlants:EER92116ProteinID:EER92116ProteinID:EER92116.1
GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0005488GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0016020GO:GO:0016787GO:GO:0030246GO:GO:0030247GO:GO:0046658
PFAM:PF07983PANTHER:PTHR32227PANTHER:PTHR32227:SF118SMART:SM00768EnsemblPlantsGene:SORBI_3001G334900unigene:Sbi.5180
SignalP:SignalP-noTMUniParc:UPI0001A82062InterPro:X8RefSeq:XP_002465118.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:+:62362305..62365602
Molecular Weight (calculated)
18874.8 Da
IEP (calculated)
4.777
GRAVY (calculated)
0.234
Length
197 amino acids
Sequence
(BLAST)
001: MEASSSSLPL VAAVLLLSST LAASDFCVCR SDQPTAVLQK AIDFACGPQG GADCTSILQG GGCYNPNTVA AHCSWAANTY YQNNKARGAT CDFGGAATVS
101: TTDPSFSGCT FASSATSAGA GTGTAGTTTA GGATTGTGTG TFSPGVGTSG FNGTGMGGST LGPTGNTLDA AAPGLLPGAA SLAAATVLSF LALQLHH
Best Arabidopsis Sequence Match ( AT1G69295.1 )
(BLAST)
001: MSVLLPLCLI ISMFTYSNAA YCLCKEGNEQ VLQKAIDYAC GNGADCTQIQ PTGACYQPNT VKNHCDVAVN SYYQKKASSG ATCDFNGAAS PSTTPPSTAS
101: NCLTGSSSSG TPTTGTPTTG TPTSGTPTTG TPTTGTPTTG TPTSGTPTSG FPNTGTPNTG TNTGMPNSNG MPTSSSSSVF PGTTLGPTGS GGLGDPNAGE
201: KLSVRTNTVV FLLTGVAAML VI
Arabidopsis Description
PDCB4PLASMODESMATA CALLOSE-BINDING PROTEIN 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93V72]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.