Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 50.78 | 76.47 |
| Bra003318.1-P | Field mustard | extracellular | 50.78 | 76.47 |
| CDY56240 | Canola | extracellular | 50.0 | 73.99 |
| VIT_12s0028g02540.t01 | Wine grape | extracellular | 33.2 | 48.85 |
| KRH25694 | Soybean | extracellular | 31.64 | 46.82 |
| KRH55823 | Soybean | extracellular | 30.86 | 45.4 |
| GSMUA_Achr10P... | Banana | extracellular | 29.3 | 42.37 |
| KRH27014 | Soybean | extracellular | 28.91 | 42.29 |
| KRH22312 | Soybean | extracellular | 28.52 | 39.89 |
| OQU76517 | Sorghum | extracellular | 25.78 | 37.93 |
| Zm00001d046155_P001 | Maize | extracellular | 25.78 | 37.5 |
| TraesCS7D01G332800.1 | Wheat | plasma membrane | 25.78 | 37.08 |
| Os06t0537700-01 | Rice | extracellular | 26.56 | 36.56 |
| TraesCS7A01G346300.1 | Wheat | endoplasmic reticulum, plasma membrane | 25.39 | 36.52 |
| TraesCS7B01G236800.1 | Wheat | endoplasmic reticulum, extracellular | 25.39 | 36.52 |
| Solyc07g053430.2.1 | Tomato | endoplasmic reticulum, extracellular | 30.47 | 34.67 |
| AT5G35740.1 | Thale cress | extracellular | 16.02 | 34.45 |
| AT2G04910.1 | Thale cress | extracellular | 15.23 | 31.45 |
| HORVU0Hr1G021440.2 | Barley | plastid | 17.19 | 27.85 |
| AT4G05430.3 | Thale cress | extracellular, plasma membrane | 16.8 | 25.6 |
| AT1G18650.1 | Thale cress | extracellular | 17.58 | 24.46 |
| PGSC0003DMT400024290 | Potato | extracellular, vacuole | 30.08 | 22.25 |
| AT2G03505.1 | Thale cress | extracellular | 14.45 | 22.02 |
| AT5G61130.1 | Thale cress | extracellular | 16.41 | 20.9 |
| AT2G30933.1 | Thale cress | extracellular | 18.36 | 20.7 |
| AT1G26450.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 15.23 | 19.8 |
| AT5G08000.2 | Thale cress | extracellular | 16.41 | 19.72 |
| AT4G13600.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 16.02 | 17.75 |
| AT1G69295.1 | Thale cress | extracellular | 14.84 | 17.12 |
| AT1G13830.2 | Thale cress | mitochondrion, peroxisome, plastid, vacuole | 13.67 | 16.59 |
| AT1G29380.1 | Thale cress | extracellular | 18.75 | 15.24 |
| AT1G09460.1 | Thale cress | extracellular, vacuole | 17.97 | 13.94 |
| AT1G79480.1 | Thale cress | extracellular | 16.02 | 10.33 |
| AT5G67460.1 | Thale cress | vacuole | 15.23 | 10.26 |
Protein Annotations
| Gene3D:1.20.58.1040 | MapMan:35.1 | EntrezGene:824979 | UniProt:A0A1I9LSI7 | ProteinID:ANM65545.1 | ArrayExpress:AT3G58100 |
| EnsemblPlantsGene:AT3G58100 | RefSeq:AT3G58100 | TAIR:AT3G58100 | RefSeq:AT3G58100-TAIR-G | EnsemblPlants:AT3G58100.2 | Unigene:At.34762 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001327504.1 | Symbol:PDCB5 | PFAM:PF07983 |
| PANTHER:PTHR32227 | PANTHER:PTHR32227:SF98 | SMART:SM00768 | TMHMM:TMhelix | UniParc:UPI0000048892 | InterPro:X8 |
| SEG:seg | : | : | : | : | : |
Description
PDCB5Plasmodesmata callose-binding protein 5 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI7]
Coordinates
chr3:-:21515170..21517739
Molecular Weight (calculated)
27752.3 Da
IEP (calculated)
6.134
GRAVY (calculated)
-0.001
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHPNLSLFH ETFQNILESI QIHSLVTVRS SSFSDTFNGN FLVLHCKISG YKKKTQNLLL NTPLLDLLPL SLLSSEMIMS LPQCSHLRLS ILAATAAMLM
101: VITTAQIGGQ VIQVELWCVA KNNAEDSSLQ TAIEWACGQG GADCGPIQQG GPCNDPTDVQ KMASFVFNNY YLKNGEEDEA CNFNNNAALT SLNPSQGTCK
201: YPSSKGANNG RLADDTSMGA GQADMSRGGR PISSSWMVTF IGFGSLLTMT WIIHHL
101: VITTAQIGGQ VIQVELWCVA KNNAEDSSLQ TAIEWACGQG GADCGPIQQG GPCNDPTDVQ KMASFVFNNY YLKNGEEDEA CNFNNNAALT SLNPSQGTCK
201: YPSSKGANNG RLADDTSMGA GQADMSRGGR PISSSWMVTF IGFGSLLTMT WIIHHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.