Factsheet for Bra003318.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98264	Canola	endoplasmic reticulum, extracellular, plasma membrane	97.65	97.65
CDY56240	Canola	extracellular	94.12	92.49
Bra004688.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	57.06	53.89
AT3G58100.2	Thale cress	cytosol	76.47	50.78
VIT_12s0028g02540.t01	Wine grape	extracellular	49.41	48.28
KRH25694	Soybean	extracellular	44.71	43.93
KRH55823	Soybean	extracellular	42.94	41.95
GSMUA_Achr10P...	Banana	extracellular	42.94	41.24
OQU76517	Sorghum	extracellular	40.0	39.08
KRH27014	Soybean	extracellular	40.0	38.86
Zm00001d046155_P001	Maize	extracellular	40.0	38.64
TraesCS7A01G346300.1	Wheat	endoplasmic reticulum, plasma membrane	40.0	38.2
TraesCS7D01G332800.1	Wheat	plasma membrane	40.0	38.2
TraesCS7B01G236800.1	Wheat	endoplasmic reticulum, extracellular	39.41	37.64
Os06t0537700-01	Rice	extracellular	40.0	36.56
KRH22312	Soybean	extracellular	38.82	36.07
Bra034233.1-P	Field mustard	cytosol	22.35	34.55
Solyc07g053430.2.1	Tomato	endoplasmic reticulum, extracellular	43.53	32.89
Bra035382.1-P	Field mustard	extracellular	21.76	31.09
HORVU0Hr1G021440.2	Barley	plastid	27.06	29.11
Bra026878.1-P	Field mustard	extracellular	20.0	24.11
Bra026879.1-P	Field mustard	extracellular	18.82	22.54
Bra026880.1-P	Field mustard	extracellular	22.94	21.79
PGSC0003DMT400024290	Potato	extracellular, vacuole	43.53	21.39
Bra025116.1-P	Field mustard	extracellular	20.0	21.12
Bra029334.1-P	Field mustard	extracellular	24.12	21.03
Bra016724.1-P	Field mustard	extracellular	21.18	20.93
Bra009313.1-P	Field mustard	extracellular	25.88	20.75
Bra035941.1-P	Field mustard	extracellular	24.12	20.6
Bra004003.1-P	Field mustard	extracellular	23.53	18.35
Bra032719.1-P	Field mustard	endoplasmic reticulum, extracellular	21.76	17.87
Bra012981.1-P	Field mustard	extracellular, vacuole	22.94	17.57
Bra012458.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	20.0	17.35
Bra019700.1-P	Field mustard	extracellular	20.0	17.26
Bra038314.1-P	Field mustard	mitochondrion	22.94	17.26
Bra010831.1-P	Field mustard	nucleus	28.24	16.67
Bra020023.1-P	Field mustard	endoplasmic reticulum, vacuole	28.82	16.61
Bra030780.1-P	Field mustard	endoplasmic reticulum, extracellular	27.65	15.31
Bra021679.1-P	Field mustard	extracellular, plasma membrane, vacuole	25.29	14.24
Bra032314.1-P	Field mustard	plastid	30.0	13.46
Bra008414.1-P	Field mustard	cytosol, nucleus, plastid, vacuole	20.59	10.84
Bra031835.1-P	Field mustard	vacuole	21.18	9.5
Bra035122.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	18.82	8.18

Protein Annotations

EnsemblPlants:Bra003318.1	EnsemblPlants:Bra003318.1-P	EnsemblPlantsGene:Bra003318	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:X8	PANTHER:PTHR32227	PANTHER:PTHR32227:SF98	PFAM:PF07983	SEG:seg	SignalP:SignalP-noTM
SMART:SM00768	TMHMM:TMhelix	UniParc:UPI0002541629	UniProt:M4CGI5	MapMan:35.1	:

Description

AT3G58100 (E=1e-064) PDCB5 | PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5); callose binding / polysaccharide binding

Coordinates

chrA07:-:12578503..12579348

Molecular Weight (calculated)

18274.7 Da

IEP (calculated)

6.221

GRAVY (calculated)

-0.025

Length

170 amino acids

Sequence
(BLAST)

001: MTLPHLHFSL LAATAIMLVA IADAQAGGQV LQAELWCVAK NNAEDSSLQT AIDWACGQGG ADCGPIQQGR ACNDPTDIQK MASYVFNNYY LKNGLADDAC
101: NFNNNAALTS INPSQGTCRY PSSKRVSNGR VADDTSMGSG QADMSRGRRV STTWILLVFS ILMVTWIIHL

Best Arabidopsis Sequence Match ( AT3G58100.2 )
(BLAST)

001: MIHPNLSLFH ETFQNILESI QIHSLVTVRS SSFSDTFNGN FLVLHCKISG YKKKTQNLLL NTPLLDLLPL SLLSSEMIMS LPQCSHLRLS ILAATAAMLM
101: VITTAQIGGQ VIQVELWCVA KNNAEDSSLQ TAIEWACGQG GADCGPIQQG GPCNDPTDVQ KMASFVFNNY YLKNGEEDEA CNFNNNAALT SLNPSQGTCK
201: YPSSKGANNG RLADDTSMGA GQADMSRGGR PISSSWMVTF IGFGSLLTMT WIIHHL

Arabidopsis Description

PDCB5Plasmodesmata callose-binding protein 5 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.