Factsheet for Bra008414.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56795	Canola	cytosol, nucleus, plastid, vacuole	94.43	97.44
Bra035122.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	83.28	68.8
PGSC0003DMT400025000	Potato	nucleus	40.87	47.48
Solyc12g017360.1.1	Tomato	cytosol, peroxisome, plastid	43.34	47.46
KRH43685	Soybean	plastid	35.91	46.77
GSMUA_Achr6P00220_001	Banana	nucleus	40.87	43.56
Zm00001d042912_P001	Maize	nucleus	23.53	42.7
HORVU2Hr1G099430.1	Barley	plastid	28.79	40.43
KRH13771	Soybean	vacuole	43.96	39.55
HORVU5Hr1G089770.2	Barley	plastid	23.22	38.86
VIT_19s0085g00810.t01	Wine grape	golgi, vacuole	43.03	37.77
Os06t0665200-00	Rice	cytosol	24.46	36.92
EER90180	Sorghum	extracellular, plasma membrane	25.08	36.32
Bra035382.1-P	Field mustard	extracellular	13.31	36.13
Bra034233.1-P	Field mustard	cytosol	11.76	34.55
TraesCS7B01G384100.1	Wheat	extracellular	23.53	34.23
TraesCS7D01G468800.1	Wheat	extracellular	23.22	33.78
HORVU7Hr1G108980.1	Barley	extracellular	23.22	33.63
Zm00001d002348_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	34.06	33.54
TraesCS7A01G481700.1	Wheat	extracellular	22.6	33.33
TraesCS2B01G444800.1	Wheat	extracellular, plasma membrane	32.51	29.41
TraesCS2A01G425000.1	Wheat	plastid	32.82	29.36
TraesCS2D01G423000.1	Wheat	extracellular, plasma membrane	32.2	29.21
TraesCS5D01G374100.1	Wheat	extracellular, vacuole	36.22	26.83
KXG27096	Sorghum	extracellular, vacuole	34.67	26.29
TraesCS5B01G366600.1	Wheat	plastid	34.37	26.18
TraesCS5A01G365000.1	Wheat	extracellular	35.91	25.05
KXG36188	Sorghum	cytosol, endoplasmic reticulum, vacuole	40.25	23.99
Bra026878.1-P	Field mustard	extracellular	10.22	23.4
Bra026879.1-P	Field mustard	extracellular	10.22	23.24
Os09t0560850-00	Rice	cytosol, endoplasmic reticulum, peroxisome	40.87	22.72
Bra032719.1-P	Field mustard	endoplasmic reticulum, extracellular	14.24	22.22
Zm00001d006343_P001	Maize	endoplasmic reticulum, plastid, vacuole	39.01	21.99
Bra031835.1-P	Field mustard	vacuole	25.39	21.64
Bra010831.1-P	Field mustard	nucleus	19.2	21.53
Bra016724.1-P	Field mustard	extracellular	11.46	21.51
Bra003318.1-P	Field mustard	extracellular	10.84	20.59
Bra026880.1-P	Field mustard	extracellular	11.15	20.11
Zm00001d026281_P003	Maize	plastid	32.82	19.34
Bra025116.1-P	Field mustard	extracellular	9.6	19.25
Bra012458.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	11.46	18.88
Bra009313.1-P	Field mustard	extracellular	12.07	18.4
Bra020023.1-P	Field mustard	endoplasmic reticulum, vacuole	16.72	18.31
Bra030780.1-P	Field mustard	endoplasmic reticulum, extracellular	17.34	18.24
Bra035941.1-P	Field mustard	extracellular	11.15	18.09
Bra029334.1-P	Field mustard	extracellular	10.84	17.95
Bra004003.1-P	Field mustard	extracellular	12.07	17.89
Bra004688.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	9.91	17.78
Bra032314.1-P	Field mustard	plastid	19.2	16.36
Bra019700.1-P	Field mustard	extracellular	9.91	16.24
Bra021679.1-P	Field mustard	extracellular, plasma membrane, vacuole	15.17	16.23
Bra012981.1-P	Field mustard	extracellular, vacuole	11.15	16.22
Bra038314.1-P	Field mustard	mitochondrion	11.15	15.93

Protein Annotations

EnsemblPlants:Bra008414.1	EnsemblPlants:Bra008414.1-P	EnsemblPlantsGene:Bra008414	InterPro:X8	PANTHER:PTHR32227	PANTHER:PTHR32227:SF237
PFAM:PF07983	SEG:seg	SMART:SM00768	UniParc:UPI000254689B	UniProt:M4CW17	MapMan:35.2

Description

AT1G79480 (E=9e-039) | LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT5G67460.1); Has 136128 Blast hits to 57102 proteins in 1817 species: Archae - 165; Bacteria - 17617; Metazoa - 56967; Fungi - 20796; Plants - 12784; Viruses - 3661; Other Eukaryotes - 24138 (source: NCBI BLink).

Coordinates

chrA02:-:15490699..15491670

Molecular Weight (calculated)

33515.7 Da

IEP (calculated)

4.094

GRAVY (calculated)

-0.526

Length

323 amino acids

Sequence
(BLAST)

001: MLEKMMTQLN LAQPLDYSTT SCNTQPNNVS ATLTLSPYVP LAPLSVPENA SPFCVNPPNT PLNSPPSSSY PELSPPPGPI NVPNPAESSS NPNSNPNTPD
101: STSNPNSIPN PPETSSSNPN PPVTVPNPPE SSSNPNPPES SLNPNPPVTV PNPPDISSPN PPETVPSPSV PGYTPGPSGP ISGPPYSEPG PSTPTDTPTP
201: SGNIPTPSSG FLPPIVYPPP MVPPPPSVTP TSAYWCVAKP SVPDPIIQEA MNFACGSGAD CHSIQPNGAC FKPNTLWAHA SYAFNSYWQR TKGSGGSCSF
301: GGTGMLVTVD PSKIFTYIFH YSS

Best Arabidopsis Sequence Match ( AT1G79480.1 )
(BLAST)

001: MESYRVFTTI CLLLCLFLSA NFFTHYVVDA RKSVGFEREP KKVMMIKALK HTSLLQKMMT QLNLAQPLDY SSSSNTQPYG VSTTLTLPPY VSLPPLSVPG
101: NAPPFCINPP NTPPSSSYPG LSPPPGPITL PNPPDSSSNP NSNPNPPESS SNPNPPDSSS NPNSNPNPPV TVPNPPESSS NPNPPDSSSN PNSNPNPPES
201: SSNPNPPVTV PNPPESSSNP NPPESSSNPN PPITIPYPPE SSSPNPPEIV PSPPESGYTP GPVLGPPYSE PGPSTPTGSI PSPSSGFLPP IVYPPPMAPP
301: SPSVTPTSAY WCVAKPSVPD PIIQEAMNFA CGSGADCHSI QPNGPCFKPN TLWAHASFAY NSYWQRTKST GGSCTFGGTG MLVTVDPSFN GCHFDFF

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0D0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.