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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 6
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47357 Canola endoplasmic reticulum, extracellular 82.61 91.44
CDY01142 Canola extracellular 80.68 88.36
AT4G13600.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 69.57 62.34
KRH42801 Soybean extracellular 39.61 42.71
Solyc09g091920.2.1 Tomato endoplasmic reticulum, extracellular 40.1 42.13
PGSC0003DMT400080365 Potato endoplasmic reticulum, extracellular 40.58 41.18
KRH58889 Soybean endoplasmic reticulum, extracellular 37.68 40.84
Bra035382.1-P Field mustard extracellular 21.74 37.82
GSMUA_Achr6P27540_001 Banana extracellular 32.85 36.96
EES05109 Sorghum extracellular, plasma membrane 33.82 36.46
Zm00001d050544_P001 Maize extracellular 32.85 36.36
PGSC0003DMT400011608 Potato mitochondrion 32.85 36.17
VIT_05s0029g00190.t01 Wine grape extracellular 38.16 35.91
Zm00001d016545_P001 Maize extracellular 32.37 35.83
Solyc12g098410.1.1 Tomato endoplasmic reticulum, extracellular 33.82 35.35
TraesCS5A01G456400.1 Wheat extracellular, plasma membrane 30.92 35.16
GSMUA_Achr3P16040_001 Banana mitochondrion 23.67 35.0
Bra026878.1-P Field mustard extracellular 23.67 34.75
TraesCS5D01G467200.1 Wheat extracellular, plasma membrane 30.43 34.62
TraesCS5B01G465400.1 Wheat extracellular, plasma membrane 29.95 34.07
Bra034233.1-P Field mustard cytosol 17.87 33.64
Bra026879.1-P Field mustard extracellular 22.71 33.1
Bra025116.1-P Field mustard extracellular 25.6 32.92
Bra016724.1-P Field mustard extracellular 24.64 29.65
Bra035941.1-P Field mustard extracellular 28.5 29.65
Bra026880.1-P Field mustard extracellular 25.6 29.61
GSMUA_Achr9P07170_001 Banana extracellular 25.12 29.05
Bra029334.1-P Field mustard extracellular 26.09 27.69
Bra019700.1-P Field mustard extracellular 25.12 26.4
Bra009313.1-P Field mustard extracellular 26.09 25.47
Bra012981.1-P Field mustard extracellular, vacuole 26.57 24.77
Bra004003.1-P Field mustard extracellular 25.6 24.31
Bra012458.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 22.71 23.98
HORVU5Hr1G109550.1 Barley cytosol, plastid 30.43 23.51
Bra003318.1-P Field mustard extracellular 17.87 21.76
Bra038314.1-P Field mustard mitochondrion 22.71 20.8
Bra004688.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 17.39 20.0
Bra021679.1-P Field mustard extracellular, plasma membrane, vacuole 26.57 18.21
Bra010831.1-P Field mustard nucleus 24.64 17.71
Bra030780.1-P Field mustard endoplasmic reticulum, extracellular 24.15 16.29
Bra020023.1-P Field mustard endoplasmic reticulum, vacuole 23.19 16.27
Bra008414.1-P Field mustard cytosol, nucleus, plastid, vacuole 22.22 14.24
Bra032314.1-P Field mustard plastid 25.12 13.72
Bra031835.1-P Field mustard vacuole 21.74 11.87
Bra035122.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 21.74 11.51
Protein Annotations
EnsemblPlants:Bra032719.1EnsemblPlants:Bra032719.1-PEnsemblPlantsGene:Bra032719InterPro:X8PANTHER:PTHR32227PANTHER:PTHR32227:SF98
PFAM:PF07983SEG:segSignalP:SignalP-noTMSMART:SM00768UniParc:UPI0002543DFDUniProt:M4EV86
MapMan:35.2:::::
Description
AT4G13600 (E=3e-029) | EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding (TAIR:AT5G08000.1); Has 804 Blast hits to 768 proteins in 66 species: Archae - 0; Bacteria - 9; Metazoa - 8; Fungi - 36; Plants - 728; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Coordinates
chrA04:+:5230476..5232517
Molecular Weight (calculated)
21015.9 Da
IEP (calculated)
6.734
GRAVY (calculated)
0.328
Length
207 amino acids
Sequence
(BLAST)
001: MALYLQSLSI ILFLLLPSST AMWCVARFDV TSQALQAALD YACAAGADCA PIQPTGLCFL PNTIQAHASY AFNSYFQRRA MAPGSCNFAG TSTIAKTDPS
101: INAGGSASTT TVGGTPTATA GNIPVTSLRP PSGTTASPFG IGGNGLIPPG ITNTDESGAY IINTSSVSIS PWGVASGSLA GHKLVANNIA CNHGGVFLAN
201: YFSETLV
Best Arabidopsis Sequence Match ( AT4G13600.1 )
(BLAST)
001: MKRKEKTKQK QKRVREVRLH TQTLHSHSFL SFLSYHFPMA LCLQTLSFLL LLLFRSSAAM WCVARFDVTS QALQAALDYA CAAGADCAPI QPNGLCFLPN
101: TVQAHASYAF NSYFQRAAMA PGSCNFAGTS TIAKTDPSYG SCVYPNSVRN AGGSASTTTV GGTPSTTVGN SPMTTLRPPS GTTTSPFGIG GGGLNPQGTT
201: TTTNTDESGS YIINKSTVSI ALFVALLLWF I
Arabidopsis Description
Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JT39]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.