Factsheet for GSMUA_Achr6P00220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P33530_001	Banana	cytosol, extracellular, plastid, vacuole	37.62	55.34
PGSC0003DMT400025000	Potato	nucleus	43.89	47.84
Solyc12g017360.1.1	Tomato	cytosol, peroxisome, plastid	46.53	47.8
VIT_03s0017g02240.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	38.94	46.64
KRH43685	Soybean	plastid	37.95	46.37
VIT_19s0085g00810.t01	Wine grape	golgi, vacuole	53.8	44.29
CDY56795	Canola	cytosol, nucleus, plastid, vacuole	43.23	41.85
Bra008414.1-P	Field mustard	cytosol, nucleus, plastid, vacuole	43.56	40.87
KRH13771	Soybean	vacuole	46.2	39.0
GSMUA_Achr11P...	Banana	extracellular	15.18	38.66
Solyc05g016390.2.1	Tomato	endoplasmic reticulum, extracellular	32.01	37.6
KRG90034	Soybean	extracellular, plasma membrane	36.63	37.5
CDX87377	Canola	endoplasmic reticulum, extracellular, vacuole	46.2	36.36
GSMUA_Achr9P09230_001	Banana	extracellular	14.52	36.36
GSMUA_Achr5P24740_001	Banana	endoplasmic reticulum, extracellular	17.16	36.36
GSMUA_Achr7P07950_001	Banana	extracellular	15.84	36.09
CDX88545	Canola	endoplasmic reticulum, extracellular, vacuole	46.2	35.99
Bra035122.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.2	35.81
AT1G79480.1	Thale cress	extracellular	45.87	35.01
GSMUA_Achr3P31190_001	Banana	cytosol, nucleus, plastid	17.16	34.9
GSMUA_Achr7P26650_001	Banana	extracellular	13.2	34.48
GSMUA_Achr4P23440_001	Banana	cytosol	14.85	30.0
GSMUA_Achr3P16040_001	Banana	mitochondrion	13.53	29.29
GSMUA_Achr8P28170_001	Banana	extracellular	13.53	26.45
GSMUA_Achr4P32790_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	15.18	25.56
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	14.85	23.56
GSMUA_Achr10P...	Banana	extracellular	13.53	23.16
GSMUA_Achr9P07140_001	Banana	extracellular	14.19	23.12
GSMUA_Achr9P07170_001	Banana	extracellular	13.53	22.91
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, vacuole	26.73	22.88
GSMUA_Achr6P27540_001	Banana	extracellular	13.86	22.83
GSMUA_Achr1P04440_001	Banana	endoplasmic reticulum, extracellular, vacuole	13.86	21.88
GSMUA_Achr5P08900_001	Banana	extracellular	13.53	21.58
GSMUA_Achr4P14960_001	Banana	endoplasmic reticulum, extracellular	16.83	21.43
GSMUA_Achr4P10810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	14.52	18.11
GSMUA_Achr2P02010_001	Banana	cytosol	25.74	16.63
GSMUA_Achr11P...	Banana	extracellular, plastid, vacuole	25.41	14.61

Protein Annotations

EnsemblPlants:GSMUA_Achr6P00220_001	EnsemblPlants:GSMUA_Achr6T00220_001	EnsemblPlantsGene:GSMUA_Achr6G00220_001	InterPro:X8	PANTHER:PTHR32227	PANTHER:PTHR32227:SF237
PFAM:PF07983	PRINTS:PR01217	SEG:seg	SMART:SM00768	UniParc:UPI000296B9D4	UniProt:M0T2X0
MapMan:35.1	:	:	:	:	:

Description

retrotransposon protein, putative, unclassified [Source:GMGC_GENE;Acc:GSMUA_Achr6G00220_001]

Coordinates

chr6:-:169594..171951

Molecular Weight (calculated)

32386.3 Da

IEP (calculated)

4.665

GRAVY (calculated)

-0.364

Length

303 amino acids

Sequence
(BLAST)

001: MTIAKETAWT KSLRQSKDSY LRDALAVKHQ RNPQMKALKR LDTHYASSDP FYYVGSPVSL PPYDDAMGPS SSPEDYPPFC VYPPYTPLPP STTPSTPIPI
101: IQPPPPPPET TNPPVLTPNP PVYIPGTPEV VPSPPGAVPN PPETVPSPPG TVPNPPEAVP SPATNVPSPP EYEPSPPTYV PSPIGFFTPG PPIFLPPVVY
201: PPPIAPPSPA QGSRSMWCVA KPTVPDPIIQ EAMNYACGSG ADCDSILPNG SCYQPDTLIA HASFAFNSYW QRTKVAGGTC DFGGTAMLVT RDPSYDGCHF
301: IIY

Best Arabidopsis Sequence Match ( AT1G79480.2 )
(BLAST)

001: MESYRVFTTI CLLLCLFLSA NFFTHYVDAR KSVGFEREPK KVMMIKALKH TSLLQKMMTQ LNLAQPLDYS SSSNTQPYGV STTLTLPPYV SLPPLSVPGN
101: APPFCINPPN TPPSSSYPGL SPPPGPITLP NPPDSSSNPN SNPNPPESSS NPNPPDSSSN PNSNPNPPVT VPNPPESSSN PNPPDSSSNP NSNPNPPESS
201: SNPNPPVTVP NPPESSSNPN PPESSSNPNP PITIPYPPES SSPNPPEIVP SPPESGYTPG PVLGPPYSEP GPSTPTGSIP SPSSGFLPPI VYPPPMAPPS
301: PSVTPTSAYW CVAKPSVPDP IIQEAMNFAC GSGADCHSIQ PNGPCFKPNT LWAHASFAYN SYWQRTKSTG GSCTFGGTGM LVTVDPSFNG CHFDFF

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0D0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.