Factsheet for VIT_19s0085g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P00220_001	Banana	nucleus	44.29	53.8
KRH43685	Soybean	plastid	35.33	52.42
VIT_03s0017g02240.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	35.87	52.17
Zm00001d042912_P001	Maize	nucleus	24.46	50.56
Solyc12g017360.1.1	Tomato	cytosol, peroxisome, plastid	39.95	49.83
PGSC0003DMT400025000	Potato	nucleus	37.23	49.28
HORVU5Hr1G089770.2	Barley	plastid	25.54	48.7
KRH13771	Soybean	vacuole	47.28	48.47
EER90180	Sorghum	extracellular, plasma membrane	28.53	47.09
HORVU2Hr1G099430.1	Barley	plastid	29.35	46.96
CDY56795	Canola	cytosol, nucleus, plastid, vacuole	37.5	44.09
Os06t0665200-00	Rice	cytosol	25.27	43.46
Bra008414.1-P	Field mustard	cytosol, nucleus, plastid, vacuole	37.77	43.03
TraesCS7D01G468800.1	Wheat	extracellular	25.82	42.79
TraesCS7B01G384100.1	Wheat	extracellular	25.54	42.34
HORVU7Hr1G108980.1	Barley	extracellular	25.54	42.15
TraesCS7A01G481700.1	Wheat	extracellular	25.0	42.01
CDX87377	Canola	endoplasmic reticulum, extracellular, vacuole	42.12	40.26
Bra035122.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	42.39	39.9
CDX88545	Canola	endoplasmic reticulum, extracellular, vacuole	42.12	39.85
VIT_12s0057g00700.t01	Wine grape	extracellular	12.5	39.32
AT1G79480.1	Thale cress	extracellular	40.49	37.53
TraesCS2B01G444800.1	Wheat	extracellular, plasma membrane	35.33	36.41
TraesCS2A01G425000.1	Wheat	plastid	35.6	36.29
TraesCS2D01G423000.1	Wheat	extracellular, plasma membrane	34.51	35.67
Zm00001d002348_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	31.25	35.06
TraesCS5D01G374100.1	Wheat	extracellular, vacuole	39.4	33.26
TraesCS5B01G366600.1	Wheat	plastid	37.77	32.78
TraesCS5A01G365000.1	Wheat	extracellular	40.22	31.97
KXG36188	Sorghum	cytosol, endoplasmic reticulum, vacuole	45.11	30.63
KXG27096	Sorghum	extracellular, vacuole	34.24	29.58
Zm00001d006343_P001	Maize	endoplasmic reticulum, plastid, vacuole	45.92	29.49
Os09t0560850-00	Rice	cytosol, endoplasmic reticulum, peroxisome	46.47	29.43
VIT_10s0003g04340.t01	Wine grape	plasma membrane	15.22	27.05
VIT_10s0003g02720.t01	Wine grape	plastid	13.59	25.64
VIT_12s0028g00050.t01	Wine grape	extracellular	16.3	25.0
VIT_05s0029g00190.t01	Wine grape	extracellular	13.86	23.18
VIT_07s0129g00230.t01	Wine grape	vacuole	25.82	23.0
VIT_12s0028g02540.t01	Wine grape	extracellular	10.6	22.41
VIT_17s0000g07260.t01	Wine grape	extracellular	12.5	22.22
Zm00001d026281_P003	Maize	plastid	32.07	21.53
VIT_01s0011g00570.t01	Wine grape	extracellular	10.87	20.73
VIT_14s0060g00440.t01	Wine grape	vacuole	23.1	13.82
VIT_09s0002g06500.t01	Wine grape	cytosol, peroxisome, plastid	11.41	11.38

Protein Annotations

EntrezGene:100245083	wikigene:100245083	MapMan:35.1	ProteinID:CBI24152	ProteinID:CBI24152.3	UniProt:D7T125
EMBL:FN595503	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	GO:GO:0030246	GO:GO:0030247
GO:GO:0046658	EntrezGene:LOC100245083	wikigene:LOC100245083	PFAM:PF07983	PRINTS:PR01217	PANTHER:PTHR32227
PANTHER:PTHR32227:SF237	SMART:SM00768	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001985787	ArrayExpress:VIT_19s0085g00810
EnsemblPlantsGene:VIT_19s0085g00810	EnsemblPlants:VIT_19s0085g00810.t01	InterPro:X8	RefSeq:XP_002264966	RefSeq:XP_002264966.2	SEG:seg

Description

No Description!

Coordinates

chr19:+:23265199..23266600

Molecular Weight (calculated)

38855.4 Da

IEP (calculated)

7.412

GRAVY (calculated)

-0.250

Length

368 amino acids

Sequence
(BLAST)

001: MERRGGSIRL CILALYVSFL VISSSHHCDA KRAMRTLRGS KHSSLIKKLN VKRLDGDVSM LDSRKTNTQP YGVSSPFSLP PFDSLGPIPL PDTAPPFCIY
101: PPSTPQPPST IVPTPIGITP PFYFPPVVPI QGPPPSPVGV IPGSPEYTPN PSPPEAFPGP NPNPPVIFPA PNPNPPETVP SPNPNPPQIV PSPIVVFPGP
201: PEFTPAPPSP NPPFYEPSPP NYRPSPGGPG GFVPSPPHYV PTPRGPGGPG GFVPTPPFQP PVVFPPPTVP PPPHKGPNFP LWCVAKPTVP DPIIEEAMNY
301: ACGSGADCAS IGSSGSCFQP DTLFAHASYA FNSYWQRTKV AGGTCDFGGT AMLVSVDPSY DGCHFIYL

Best Arabidopsis Sequence Match ( AT1G79480.2 )
(BLAST)

001: MESYRVFTTI CLLLCLFLSA NFFTHYVDAR KSVGFEREPK KVMMIKALKH TSLLQKMMTQ LNLAQPLDYS SSSNTQPYGV STTLTLPPYV SLPPLSVPGN
101: APPFCINPPN TPPSSSYPGL SPPPGPITLP NPPDSSSNPN SNPNPPESSS NPNPPDSSSN PNSNPNPPVT VPNPPESSSN PNPPDSSSNP NSNPNPPESS
201: SNPNPPVTVP NPPESSSNPN PPESSSNPNP PITIPYPPES SSPNPPEIVP SPPESGYTPG PVLGPPYSEP GPSTPTGSIP SPSSGFLPPI VYPPPMAPPS
301: PSVTPTSAYW CVAKPSVPDP IIQEAMNFAC GSGADCHSIQ PNGPCFKPNT LWAHASFAYN SYWQRTKSTG GSCTFGGTGM LVTVDPSFNG CHFDFF

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0D0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.