Factsheet for Solyc12g017360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
plastid 2
cytosol 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025000	Potato	nucleus	83.73	88.85
KRH43685	Soybean	plastid	41.36	49.19
GSMUA_Achr6P00220_001	Banana	nucleus	47.8	46.53
Zm00001d042912_P001	Maize	nucleus	27.46	45.51
CDY56795	Canola	cytosol, nucleus, plastid, vacuole	47.12	44.41
EER90180	Sorghum	extracellular, plasma membrane	32.88	43.5
Bra008414.1-P	Field mustard	cytosol, nucleus, plastid, vacuole	47.46	43.34
HORVU2Hr1G099430.1	Barley	plastid	33.56	43.04
Os06t0665200-00	Rice	cytosol	30.85	42.52
HORVU5Hr1G089770.2	Barley	plastid	27.46	41.97
KRH13771	Soybean	vacuole	49.83	40.95
TraesCS7D01G468800.1	Wheat	extracellular	30.17	40.09
VIT_19s0085g00810.t01	Wine grape	golgi, vacuole	49.83	39.95
TraesCS7A01G481700.1	Wheat	extracellular	29.49	39.73
TraesCS7B01G384100.1	Wheat	extracellular	29.49	39.19
HORVU7Hr1G108980.1	Barley	extracellular	29.49	39.01
CDX88545	Canola	endoplasmic reticulum, extracellular, vacuole	50.51	38.3
CDX87377	Canola	endoplasmic reticulum, extracellular, vacuole	49.83	38.18
Bra035122.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	49.83	37.6
Solyc05g016390.2.1	Tomato	endoplasmic reticulum, extracellular	32.54	37.21
Solyc07g047710.2.1	Tomato	extracellular	13.9	35.96
AT1G79480.1	Thale cress	extracellular	47.8	35.52
Solyc11g012580.1.1	Tomato	extracellular	13.22	33.33
TraesCS2B01G444800.1	Wheat	extracellular, plasma membrane	37.63	31.09
Zm00001d002348_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	34.24	30.79
TraesCS2A01G425000.1	Wheat	plastid	37.29	30.47
TraesCS2D01G423000.1	Wheat	extracellular, plasma membrane	36.61	30.34
TraesCS5D01G374100.1	Wheat	extracellular, vacuole	38.98	26.38
KXG27096	Sorghum	extracellular, vacuole	37.63	26.06
TraesCS5B01G366600.1	Wheat	plastid	37.29	25.94
TraesCS5A01G365000.1	Wheat	extracellular	38.64	24.62
KXG36188	Sorghum	cytosol, endoplasmic reticulum, vacuole	44.07	23.99
Os09t0560850-00	Rice	cytosol, endoplasmic reticulum, peroxisome	46.1	23.41
Solyc04g058080.2.1	Tomato	extracellular	13.9	23.03
Zm00001d006343_P001	Maize	endoplasmic reticulum, plastid, vacuole	44.07	22.69
Solyc03g115200.2.1	Tomato	extracellular	14.24	22.46
Solyc01g010310.2.1	Tomato	extracellular	13.9	21.69
Solyc09g091920.2.1	Tomato	endoplasmic reticulum, extracellular	14.24	21.32
Solyc05g012380.2.1	Tomato	extracellular	14.24	20.79
Solyc12g098410.1.1	Tomato	endoplasmic reticulum, extracellular	13.9	20.71
Solyc07g056310.2.1	Tomato	extracellular	17.29	20.65
Solyc02g071200.2.1	Tomato	extracellular	20.68	20.13
Zm00001d026281_P003	Maize	plastid	36.27	19.53
Solyc01g101120.2.1	Tomato	endoplasmic reticulum, golgi	23.39	18.8
Solyc07g053430.2.1	Tomato	endoplasmic reticulum, extracellular	14.24	18.67
Solyc04g005420.2.1	Tomato	extracellular, vacuole	13.9	13.36

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	GO:GO:0030246	GO:GO:0030247
GO:GO:0046658	UniProt:K4DD69	PFAM:PF07983	PRINTS:PR01217	PANTHER:PTHR32227	PANTHER:PTHR32227:SF237
SMART:SM00768	EnsemblPlantsGene:Solyc12g017360.1	EnsemblPlants:Solyc12g017360.1.1	UniParc:UPI0002769407	InterPro:X8	SEG:seg

Description

No Description!

Coordinates

chr12:+:6609419..6610394

Molecular Weight (calculated)

31435.1 Da

IEP (calculated)

4.490

GRAVY (calculated)

-0.271

Length

295 amino acids

Sequence
(BLAST)

001: MSQSSQEIIK INGLKHFNMY LPMAGSSYGV GSPFNLPPYD SLPPIPNTPT TPYCVNPPPA NGNSGPIINQ PSSPSNSPII NQPSSPSSGP IINQPPSPSY
101: GPIINQPSSP SSGPTIIPSP PPQFLPPIIV PNTPQYVSPN PPTNVPSPTQ PIFSPPYYYE PSPPRYVPIN PPSYDVPISP PTGYFLPPVV YPPPAVPPPP
201: HIADAIALWC VAKPSVPDPI IQEAMNYACA SGADCDQLQP SGSCYQPDTL FAHASYAFNS YWQRTKMAGG TCDFGGTAIL VTVDPSFDGC RFIYY

Best Arabidopsis Sequence Match ( AT1G79480.2 )
(BLAST)

001: MESYRVFTTI CLLLCLFLSA NFFTHYVDAR KSVGFEREPK KVMMIKALKH TSLLQKMMTQ LNLAQPLDYS SSSNTQPYGV STTLTLPPYV SLPPLSVPGN
101: APPFCINPPN TPPSSSYPGL SPPPGPITLP NPPDSSSNPN SNPNPPESSS NPNPPDSSSN PNSNPNPPVT VPNPPESSSN PNPPDSSSNP NSNPNPPESS
201: SNPNPPVTVP NPPESSSNPN PPESSSNPNP PITIPYPPES SSPNPPEIVP SPPESGYTPG PVLGPPYSEP GPSTPTGSIP SPSSGFLPPI VYPPPMAPPS
301: PSVTPTSAYW CVAKPSVPDP IIQEAMNFAC GSGADCHSIQ PNGPCFKPNT LWAHASFAYN SYWQRTKSTG GSCTFGGTGM LVTVDPSFNG CHFDFF

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0D0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.