Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88545 | Canola | endoplasmic reticulum, extracellular, vacuole | 78.34 | 79.95 |
| CDX87377 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.83 | 79.22 |
| Bra035122.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 77.83 | 79.03 |
| KRH43685 | Soybean | plastid | 29.97 | 47.98 |
| Solyc12g017360.1.1 | Tomato | cytosol, peroxisome, plastid | 35.52 | 47.8 |
| PGSC0003DMT400025000 | Potato | nucleus | 33.25 | 47.48 |
| Zm00001d042912_P001 | Maize | nucleus | 20.65 | 46.07 |
| GSMUA_Achr6P00220_001 | Banana | nucleus | 35.01 | 45.87 |
| KRH13771 | Soybean | vacuole | 40.55 | 44.85 |
| AT5G35740.1 | Thale cress | extracellular | 12.34 | 41.18 |
| HORVU2Hr1G099430.1 | Barley | plastid | 23.68 | 40.87 |
| VIT_19s0085g00810.t01 | Wine grape | golgi, vacuole | 37.53 | 40.49 |
| HORVU5Hr1G089770.2 | Barley | plastid | 18.89 | 38.86 |
| EER90180 | Sorghum | extracellular, plasma membrane | 21.41 | 38.12 |
| Os06t0665200-00 | Rice | cytosol | 19.9 | 36.92 |
| TraesCS7B01G384100.1 | Wheat | extracellular | 20.4 | 36.49 |
| HORVU7Hr1G108980.1 | Barley | extracellular | 20.15 | 35.87 |
| Zm00001d002348_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 29.47 | 35.67 |
| TraesCS7D01G468800.1 | Wheat | extracellular | 19.9 | 35.59 |
| AT2G04910.1 | Thale cress | extracellular | 11.08 | 35.48 |
| TraesCS7A01G481700.1 | Wheat | extracellular | 19.4 | 35.16 |
| TraesCS2B01G444800.1 | Wheat | extracellular, plasma membrane | 28.21 | 31.37 |
| TraesCS2A01G425000.1 | Wheat | plastid | 27.96 | 30.75 |
| TraesCS2D01G423000.1 | Wheat | extracellular, plasma membrane | 27.46 | 30.62 |
| TraesCS5D01G374100.1 | Wheat | extracellular, vacuole | 33.5 | 30.5 |
| TraesCS5A01G365000.1 | Wheat | extracellular | 34.26 | 29.37 |
| TraesCS5B01G366600.1 | Wheat | plastid | 31.23 | 29.25 |
| KXG36188 | Sorghum | cytosol, endoplasmic reticulum, vacuole | 38.79 | 28.41 |
| KXG27096 | Sorghum | extracellular, vacuole | 29.47 | 27.46 |
| Os09t0560850-00 | Rice | cytosol, endoplasmic reticulum, peroxisome | 40.05 | 27.37 |
| Zm00001d006343_P001 | Maize | endoplasmic reticulum, plastid, vacuole | 36.78 | 25.48 |
| AT4G05430.3 | Thale cress | extracellular, plasma membrane | 10.58 | 25.0 |
| AT2G30933.1 | Thale cress | extracellular | 12.85 | 22.47 |
| AT5G67460.1 | Thale cress | vacuole | 20.91 | 21.84 |
| AT1G18650.1 | Thale cress | extracellular | 9.82 | 21.2 |
| AT2G03505.1 | Thale cress | extracellular | 8.82 | 20.83 |
| AT1G26450.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 10.33 | 20.81 |
| Zm00001d026281_P003 | Maize | plastid | 28.72 | 20.8 |
| AT4G13600.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 11.59 | 19.91 |
| AT5G61130.1 | Thale cress | extracellular | 10.08 | 19.9 |
| AT5G08000.2 | Thale cress | extracellular | 10.58 | 19.72 |
| AT1G09460.1 | Thale cress | extracellular, vacuole | 15.87 | 19.09 |
| AT1G29380.1 | Thale cress | extracellular | 14.86 | 18.73 |
| AT1G69295.1 | Thale cress | extracellular | 10.08 | 18.02 |
| AT1G13830.2 | Thale cress | mitochondrion, peroxisome, plastid, vacuole | 8.56 | 16.11 |
| AT3G58100.2 | Thale cress | cytosol | 10.33 | 16.02 |
Protein Annotations
| MapMan:35.2 | EntrezGene:844286 | ProteinID:AEE36248.1 | ProteinID:AEE36249.1 | ArrayExpress:AT1G79480 | EnsemblPlantsGene:AT1G79480 |
| RefSeq:AT1G79480 | TAIR:AT1G79480 | RefSeq:AT1G79480-TAIR-G | EnsemblPlants:AT1G79480.1 | TAIR:AT1G79480.1 | EMBL:AY800621 |
| EMBL:AY924733 | Unigene:At.51121 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0030246 |
| GO:GO:0030247 | GO:GO:0046658 | RefSeq:NP_001117621.1 | RefSeq:NP_178066.2 | PFAM:PF07983 | PRINTS:PR01217 |
| PANTHER:PTHR32227 | PANTHER:PTHR32227:SF237 | UniProt:Q5Q0D0 | SMART:SM00768 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000048E7B7 | InterPro:X8 | SEG:seg | : | : | : |
Description
Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0D0]
Coordinates
chr1:-:29897597..29899604
Molecular Weight (calculated)
41779.5 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.544
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MESYRVFTTI CLLLCLFLSA NFFTHYVVDA RKSVGFEREP KKVMMIKALK HTSLLQKMMT QLNLAQPLDY SSSSNTQPYG VSTTLTLPPY VSLPPLSVPG
101: NAPPFCINPP NTPPSSSYPG LSPPPGPITL PNPPDSSSNP NSNPNPPESS SNPNPPDSSS NPNSNPNPPV TVPNPPESSS NPNPPDSSSN PNSNPNPPES
201: SSNPNPPVTV PNPPESSSNP NPPESSSNPN PPITIPYPPE SSSPNPPEIV PSPPESGYTP GPVLGPPYSE PGPSTPTGSI PSPSSGFLPP IVYPPPMAPP
301: SPSVTPTSAY WCVAKPSVPD PIIQEAMNFA CGSGADCHSI QPNGPCFKPN TLWAHASFAY NSYWQRTKST GGSCTFGGTG MLVTVDPSFN GCHFDFF
101: NAPPFCINPP NTPPSSSYPG LSPPPGPITL PNPPDSSSNP NSNPNPPESS SNPNPPDSSS NPNSNPNPPV TVPNPPESSS NPNPPDSSSN PNSNPNPPES
201: SSNPNPPVTV PNPPESSSNP NPPESSSNPN PPITIPYPPE SSSPNPPEIV PSPPESGYTP GPVLGPPYSE PGPSTPTGSI PSPSSGFLPP IVYPPPMAPP
301: SPSVTPTSAY WCVAKPSVPD PIIQEAMNFA CGSGADCHSI QPNGPCFKPN TLWAHASFAY NSYWQRTKST GGSCTFGGTG MLVTVDPSFN GCHFDFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.