Factsheet for GSMUA_Achr8P33530_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089770.2	Barley	plastid	39.81	42.49
Zm00001d042912_P001	Maize	nucleus	33.5	38.76
HORVU2Hr1G099430.1	Barley	plastid	43.2	38.7
GSMUA_Achr6P00220_001	Banana	nucleus	55.34	37.62
GSMUA_Achr9P09230_001	Banana	extracellular	21.84	37.19
EER90180	Sorghum	extracellular, plasma membrane	39.32	36.32
GSMUA_Achr7P26650_001	Banana	extracellular	20.39	36.21
Os06t0665200-00	Rice	cytosol	37.38	35.98
GSMUA_Achr7P07950_001	Banana	extracellular	22.82	35.34
GSMUA_Achr11P...	Banana	extracellular	20.39	35.29
HORVU7Hr1G108980.1	Barley	extracellular	37.86	34.98
TraesCS7D01G468800.1	Wheat	extracellular	37.38	34.68
TraesCS7A01G481700.1	Wheat	extracellular	36.41	34.25
TraesCS7B01G384100.1	Wheat	extracellular	36.41	33.78
GSMUA_Achr3P31190_001	Banana	cytosol, nucleus, plastid	24.27	33.56
GSMUA_Achr5P24740_001	Banana	endoplasmic reticulum, extracellular	22.82	32.87
GSMUA_Achr3P16040_001	Banana	mitochondrion	21.36	31.43
GSMUA_Achr4P23440_001	Banana	cytosol	20.87	28.67
TraesCS2B01G444800.1	Wheat	extracellular, plasma membrane	47.09	27.17
TraesCS2D01G423000.1	Wheat	extracellular, plasma membrane	46.6	26.97
TraesCS2A01G425000.1	Wheat	plastid	47.09	26.87
GSMUA_Achr8P28170_001	Banana	extracellular	19.42	25.81
Zm00001d002348_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	40.29	25.3
TraesCS5B01G366600.1	Wheat	plastid	51.46	25.0
GSMUA_Achr4P32790_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	21.36	24.44
TraesCS5D01G374100.1	Wheat	extracellular, vacuole	51.46	24.31
GSMUA_Achr6P27540_001	Banana	extracellular	20.87	23.37
GSMUA_Achr10P...	Banana	extracellular	19.9	23.16
TraesCS5A01G365000.1	Wheat	extracellular	51.94	23.11
GSMUA_Achr5P08900_001	Banana	extracellular	20.87	22.63
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	20.87	22.51
GSMUA_Achr1P04440_001	Banana	endoplasmic reticulum, extracellular, vacuole	20.87	22.4
Os09t0560850-00	Rice	cytosol, endoplasmic reticulum, peroxisome	63.11	22.38
GSMUA_Achr9P07170_001	Banana	extracellular	19.42	22.35
KXG36188	Sorghum	cytosol, endoplasmic reticulum, vacuole	58.25	22.14
KXG27096	Sorghum	extracellular, vacuole	44.66	21.6
GSMUA_Achr9P07140_001	Banana	extracellular	19.42	21.51
Zm00001d006343_P001	Maize	endoplasmic reticulum, plastid, vacuole	58.74	21.12
GSMUA_Achr4P14960_001	Banana	endoplasmic reticulum, extracellular	23.79	20.59
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, vacuole	33.5	19.49
GSMUA_Achr4P10810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	21.84	18.52
Zm00001d026281_P003	Maize	plastid	44.17	16.61
GSMUA_Achr2P02010_001	Banana	cytosol	30.1	13.22
GSMUA_Achr11P...	Banana	extracellular, plastid, vacuole	31.07	12.14

Protein Annotations

EnsemblPlants:GSMUA_Achr8P33530_001	EnsemblPlants:GSMUA_Achr8T33530_001	EnsemblPlantsGene:GSMUA_Achr8G33530_001	InterPro:X8	PANTHER:PTHR32227	PANTHER:PTHR32227:SF237
PFAM:PF07983	SEG:seg	SMART:SM00768	UniParc:UPI00029511CC	UniProt:M0TVV5	MapMan:35.1

Description

retrotransposon protein, putative, unclassified [Source:GMGC_GENE;Acc:GSMUA_Achr8G33530_001]

Coordinates

chr8:+:34558458..34559166

Molecular Weight (calculated)

21770.9 Da

IEP (calculated)

4.224

GRAVY (calculated)

-0.084

Length

206 amino acids

Sequence
(BLAST)

001: MQLQLLTASP SLLPFTAEAR GSEQLDMASS HSDPSSLPSY CVYPPFTPSP PSTTPIRSPP APPPSSIYNP PPVVVPGPPF YVPSPPFYVP GPPLFLPPVV
101: YPPPRAPPPP GAGGTLPGLW CVAKPTVPDP IIQEAMDYAC NSGADCDSIQ PDGLCFQPDT LLAHASYAFN SYWQRTKVAG GTCDFGGTAM LITVDPSYDG
201: CHFNLM

Best Arabidopsis Sequence Match ( AT1G79480.1 )
(BLAST)

001: MESYRVFTTI CLLLCLFLSA NFFTHYVVDA RKSVGFEREP KKVMMIKALK HTSLLQKMMT QLNLAQPLDY SSSSNTQPYG VSTTLTLPPY VSLPPLSVPG
101: NAPPFCINPP NTPPSSSYPG LSPPPGPITL PNPPDSSSNP NSNPNPPESS SNPNPPDSSS NPNSNPNPPV TVPNPPESSS NPNPPDSSSN PNSNPNPPES
201: SSNPNPPVTV PNPPESSSNP NPPESSSNPN PPITIPYPPE SSSPNPPEIV PSPPESGYTP GPVLGPPYSE PGPSTPTGSI PSPSSGFLPP IVYPPPMAPP
301: SPSVTPTSAY WCVAKPSVPD PIIQEAMNFA CGSGADCHSI QPNGPCFKPN TLWAHASFAY NSYWQRTKST GGSCTFGGTG MLVTVDPSFN GCHFDFF

Arabidopsis Description

Carbohydrate-binding X8 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0D0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.