Factsheet for HORVU5Hr1G063000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	97.8	96.67
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	97.67	96.54
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	97.54	96.41
KXG35687	Sorghum	nucleus	85.86	86.09
Zm00001d020593_P002	Maize	nucleus, plastid	85.6	85.94
Zm00001d005794_P009	Maize	nucleus, plastid	84.82	83.95
Os09t0434100-01	Rice	plastid	31.78	83.05
GSMUA_Achr3P05790_001	Banana	nucleus	64.59	64.59
VIT_11s0016g00370.t01	Wine grape	cytosol	60.96	63.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	61.87	61.63
VIT_09s0002g00430.t01	Wine grape	nucleus	60.57	60.34
GSMUA_Achr11P...	Banana	nucleus	56.16	59.64
KRH37566	Soybean	endoplasmic reticulum, golgi	57.98	57.9
Solyc12g049570.1.1	Tomato	nucleus	57.85	57.85
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	57.59	57.66
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	55.51	57.3
CDY12335	Canola	nucleus	54.6	56.82
KRH12701	Soybean	mitochondrion, nucleus, vacuole	56.81	56.81
Bra034957.1-P	Field mustard	nucleus	54.47	56.68
KRH06271	Soybean	nucleus	56.42	55.63
KRH47705	Soybean	nucleus	55.64	55.07

Protein Annotations

Gene3D:1.10.150.60	MapMan:15.5.25	Gene3D:3.30.40.10	EMBL:AK367811	InterPro:ARID_dom	InterPro:ARID_dom_sf
ncoils:Coil	UniProt:F2DV93	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	EnsemblPlantsGene:HORVU5Hr1G063000
EnsemblPlants:HORVU5Hr1G063000.2	InterPro:IPR001606	InterPro:IPR013083	InterPro:IPR036431	EMBL:LC054176	PFAM:PF01388
PFscan:PS51011	PANTHER:PTHR22970	PANTHER:PTHR22970:SF40	SMART:SM01014	SUPFAM:SSF46774	SUPFAM:SSF57903
UniParc:UPI000200717F	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DV93]

Coordinates

chrchr5H:-:489074235..489081225

Molecular Weight (calculated)

84897.3 Da

IEP (calculated)

7.638

GRAVY (calculated)

-0.311

Length

771 amino acids

Sequence
(BLAST)

001: MSQIQSLSRS CVLLAVLCGK HADKQQRTPP GRSGPEAKRL RPSYPFPELS SAGRLEVHTL VNPTPEQFLE AQRVVQPNFF YIQGQQLEDE EIGSLVWGDA
101: DMSDPQSFVC LISPPFPTIV YLEVPIGEKL AQAVHSKGIP YVIYWRNSFS SYAASHFRNA LFSVVQSSVS HTWDSFQLAH ASFRLYCVRN NHVQSVKLGP
201: RLLGDAPKVN VVIPENEMAE EEGSSSEVSP AIKIYDDDIN MKFLLCGVPS ALDSCLLGSL EDGLNALLNI EIRGSKLQNR ISASPPPLEA ASVPRGMVTM
301: RCDMTTCSSS HVSLLVSGSA QTCFDDQLLE SHIKNELIEK SQLVRALPNS EDKLSSTEPF TSMSTACGAS TFEVWMTLPK WAAQVLKHLA PEISYRSLVA
401: LGVGCINATP VASFDRQDAD RLLFFCTGQQ KDLAGESGPY FHLPRWSASL AKDRAKTGSE SKSNLLGVNG TLEDRKAPVE GPSSLTPFKG KLKPATMRPI
501: PHSRQQQMHP FMGFPEANVH ETSQAKPNLP SAPPVKHSSA PASTAAHRKS TSGPSHAQSI IQLNPLPMKK HGCDRLPIQV CSEEDFLKDV MQFLIQRGHH
601: RLVPHGGLAE FPDAVLNAKR LDLYNLYKEV VSRGGFYVGN GINWKGQVFS KMRNHTVTNR MTGVGNTLKR HYETYLLEYE LSHDDVDGEC CLLCHSSAPG
701: DWVNCGLCGE WAHFGCDRRQ GLGTFKDYAK TDGLEYICPH CSIANYKKKP PPPQKVTNGF ANTVLPLSRN V

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.