Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g00370.t01 | Wine grape | cytosol | 72.74 | 76.08 |
| PGSC0003DMT400074246 | Potato | cytosol, mitochondrion, nucleus, vacuole | 74.55 | 74.94 |
| Solyc12g049570.1.1 | Tomato | nucleus | 74.42 | 74.71 |
| Os09t0434000-01 | Rice | cytosol | 8.53 | 71.74 |
| KRH47705 | Soybean | nucleus | 70.03 | 69.58 |
| KRH06271 | Soybean | nucleus | 70.03 | 69.31 |
| GSMUA_Achr3P05790_001 | Banana | nucleus | 62.02 | 62.26 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 62.02 | 62.02 |
| KXG35687 | Sorghum | nucleus | 60.59 | 60.99 |
| Zm00001d020593_P002 | Maize | nucleus, plastid | 60.47 | 60.94 |
| HORVU5Hr1G063000.2 | Barley | plastid | 60.34 | 60.57 |
| GSMUA_Achr11P... | Banana | nucleus | 56.07 | 59.78 |
| TraesCS5B01G214600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.08 | 59.62 |
| TraesCS5A01G216100.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.95 | 59.49 |
| TraesCS5D01G224100.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.82 | 59.36 |
| Zm00001d005794_P009 | Maize | nucleus, plastid | 59.43 | 59.05 |
| KXG25261 | Sorghum | nucleus | 55.94 | 57.81 |
| Zm00001d032096_P005 | Maize | cytosol, nucleus, vacuole | 55.56 | 57.41 |
| Os09t0434100-01 | Rice | plastid | 20.8 | 54.58 |
| Os08t0451400-01 | Rice | nucleus, plastid | 49.35 | 50.2 |
| Os08t0451700-03 | Rice | plastid | 28.42 | 47.41 |
| KXG38052 | Sorghum | cytosol, extracellular, nucleus | 4.78 | 46.25 |
| Os08t0361000-01 | Rice | mitochondrion, plastid | 9.17 | 36.79 |
| Os08t0451500-01 | Rice | mitochondrion | 7.62 | 35.54 |
Protein Annotations
| Gene3D:1.10.150.60 | EntrezGene:100251584 | MapMan:15.5.25 | Gene3D:3.30.40.10 | InterPro:ARID_dom | InterPro:ARID_dom_sf |
| ProteinID:CCB59245 | ProteinID:CCB59245.1 | UniProt:F6HXN8 | EMBL:FN596494 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | InterPro:IPR001606 | InterPro:IPR013083 | InterPro:IPR036431 | PFAM:PF01388 | PFscan:PS51011 |
| PANTHER:PTHR22970 | PANTHER:PTHR22970:SF40 | SMART:SM00501 | SMART:SM01014 | SUPFAM:SSF46774 | SUPFAM:SSF57903 |
| UniParc:UPI0002109F97 | ArrayExpress:VIT_09s0002g00430 | EnsemblPlantsGene:VIT_09s0002g00430 | EnsemblPlants:VIT_09s0002g00430.t01 | RefSeq:XP_019077809.1 | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:331476..339620
Molecular Weight (calculated)
85026.3 Da
IEP (calculated)
7.779
GRAVY (calculated)
-0.301
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHTQGISNH TCGLLAVTCG KTSECKQEHE TSNDRPRYPF PDFVSSGRLE VQTLTSPSPD EFRRVFESVQ PNFVYFQGEQ LQNDEVGSLV WGGVELSSAE
101: DICGLFGSKL PTTVYLEIPN GEKLAEALHS KGIPYVIYWK NAFSCYAACH FRNALFSVVQ SSSTHTWDAF QLAYASFRLY CVRNNHVLPA NSHKVSGKLG
201: PRLLGDPATI DVPPPEVDAG EDEEGSLGTL PAIKIYDDDV GIRFLVCGEP CMLDSCLFES LEDGLNALLS IEIRGSKLHN RVSAPPPPLQ AGTFSRGVVT
301: MRCDLSTCSS AHISLLVSGS AQTCFDDQLL ENNIKKEVTE QSQLVHALPY SEGNKPPLSE PRRSASIACG AAVFEVCAKV PAWASQVLRQ LAPDVSYRSL
401: VALGIASIQG LAVASFEKDD ANRLLFFCTR QGKYIHPNNF TPSRLPSWLK PPPPSRKRVE PSQDTSPGHH NGLVFANQAT SRRIDKEDKK TGLVNGVTMP
501: LLPAGQRLKV AAMRPIPHIR HHKMLPFSGI SEADGHDGGQ VKANLSVPPP TKHSIVGSTS AMHRKSFSSS YQAKQIISLN PLPLKKHGCG RSPIRVCSEE
601: EFLKDVMQFL NLRGHTRLIP QGGLAEFPDA ILNAKRLDLY NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTVTNRMTGV GNTLKRHYET YLLEYELAHD
701: DVDGECCLLC HSSAAGDWVN CGICGEWAHF GCDRRQGLGA FKDYAKTDGL EYICPQCSVT NFKKKANKAP NGFS
101: DICGLFGSKL PTTVYLEIPN GEKLAEALHS KGIPYVIYWK NAFSCYAACH FRNALFSVVQ SSSTHTWDAF QLAYASFRLY CVRNNHVLPA NSHKVSGKLG
201: PRLLGDPATI DVPPPEVDAG EDEEGSLGTL PAIKIYDDDV GIRFLVCGEP CMLDSCLFES LEDGLNALLS IEIRGSKLHN RVSAPPPPLQ AGTFSRGVVT
301: MRCDLSTCSS AHISLLVSGS AQTCFDDQLL ENNIKKEVTE QSQLVHALPY SEGNKPPLSE PRRSASIACG AAVFEVCAKV PAWASQVLRQ LAPDVSYRSL
401: VALGIASIQG LAVASFEKDD ANRLLFFCTR QGKYIHPNNF TPSRLPSWLK PPPPSRKRVE PSQDTSPGHH NGLVFANQAT SRRIDKEDKK TGLVNGVTMP
501: LLPAGQRLKV AAMRPIPHIR HHKMLPFSGI SEADGHDGGQ VKANLSVPPP TKHSIVGSTS AMHRKSFSSS YQAKQIISLN PLPLKKHGCG RSPIRVCSEE
601: EFLKDVMQFL NLRGHTRLIP QGGLAEFPDA ILNAKRLDLY NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTVTNRMTGV GNTLKRHYET YLLEYELAHD
701: DVDGECCLLC HSSAAGDWVN CGICGEWAHF GCDRRQGLGA FKDYAKTDGL EYICPQCSVT NFKKKANKAP NGFS
001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
Arabidopsis Description
ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]
SUBAcon: [vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.