Factsheet for GSMUA_Achr10P18680_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0434000-01	Rice	cytosol	9.3	78.26
GSMUA_Achr11P...	Banana	nucleus	69.64	74.24
GSMUA_Achr3P05790_001	Banana	nucleus	67.31	67.57
VIT_11s0016g00370.t01	Wine grape	cytosol	63.82	66.76
KXG35687	Sorghum	nucleus	62.53	62.94
Zm00001d020593_P002	Maize	nucleus, plastid	62.14	62.63
VIT_09s0002g00430.t01	Wine grape	nucleus	62.02	62.02
HORVU5Hr1G063000.2	Barley	plastid	61.63	61.87
Zm00001d005794_P009	Maize	nucleus, plastid	62.02	61.62
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	61.11	61.43
Solyc12g049570.1.1	Tomato	nucleus	61.11	61.35
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	61.76	61.28
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.5	61.03
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	61.37	60.9
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	58.53	60.48
KXG25261	Sorghum	nucleus	58.27	60.21
CDY12335	Canola	nucleus	54.91	57.35
KRH37566	Soybean	endoplasmic reticulum, golgi	57.11	57.25
Bra034957.1-P	Field mustard	nucleus	54.65	57.09
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	55.04	57.03
KRH12701	Soybean	mitochondrion, nucleus, vacuole	56.72	56.94
KRH06271	Soybean	nucleus	57.36	56.78
KRH47705	Soybean	nucleus	56.72	56.35
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.65	45.0

Protein Annotations

Gene3D:1.10.150.60	MapMan:15.5.25	Gene3D:3.30.40.10	InterPro:ARID_dom	InterPro:ARID_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G18680_001	EnsemblPlants:GSMUA_Achr10P18680_001	EnsemblPlants:GSMUA_Achr10T18680_001	InterPro:IPR001606
InterPro:IPR013083	InterPro:IPR036431	UniProt:M0RJE3	PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970
PANTHER:PTHR22970:SF40	SMART:SM01014	SUPFAM:SSF46774	SUPFAM:SSF57903	UniParc:UPI00029554CF	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT-rich interaction region, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G18680_001]

Coordinates

chr10:-:25301743..25308394

Molecular Weight (calculated)

86413.7 Da

IEP (calculated)

7.752

GRAVY (calculated)

-0.273

Length

774 amino acids

Sequence
(BLAST)

001: MYQTKQACRL IAVLCGKFAE RRREVKRGHL SLFPELVSSG RLEVHTLVNP TMDSFRNAQK SLEPNILYFQ GEQLENEEEI GTLFWGGIDV SEAETFSSLM
101: APPSPTIVYL EVPNGEKIAQ ALQAKGTPYV IYWKNAFSSY EASHFRQALL SVVQSSCSHA WDAFQLAHAS FRLYCVRNNY VMPANRQKDN GELGPHLLGS
201: APQINILIPD RVQEDGEEIL SDALPVTKIY DDDVDMRLLV CGVPCTVDAC LAGSLEDGLN ALLNIEIRGS KLHNRISAAP PPLQAGSLSR GVVTMRCDLT
301: TCSSTHISVL VSGSAQTCFN DQLLESHIKS ELIEKRQLVH VLPDCDKNKP SLFEPLPSVS IACGASSFEV RMKVPSWAAQ VLKQLAPEVS YHSLVTLGIA
401: SIQGVPVASF EKEDADRLRF FWNRQQQEYC FQYELSPPLP ALSSSLFRKR SKPFSETRPI SRGHTMRANG SIFMIDHQDV KKEVGLCEGI HMPSMIGQKR
501: LKVATMKPIP CFRRHKILPF SGVQEDMPDG SQAKTNLSTV PYAKHNTLRA PLTHRKSTSS SFHAQQIISI NPLPLKKHGC NRCSIQACTE EEFLEDVMQF
601: LILRGHSRLV PQGGISEFPD AILNAKRLDL FNLYREVVSR GGFYVGNGIN WKGQVFSKMR NYTVSNRMTG VGNTLKRHYE TYLLEYELAH DDVDGECCLL
701: CHSSTPGDWV NCGLCGEWAH FGCDRRQGLA TFKDYAKTDG LEYICPNCSL SNSKRKSQKV ANGLCNAMTL PRHE

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.