CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, vacuole

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37566	Soybean	endoplasmic reticulum, golgi	92.74	92.62
VIT_11s0016g00370.t01	Wine grape	cytosol	66.02	68.78
Os09t0434000-01	Rice	cytosol	8.17	68.48
CDY12335	Canola	nucleus	60.7	63.16
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	61.09	63.05
Bra034957.1-P	Field mustard	nucleus	60.44	62.89
KRH06271	Soybean	nucleus	60.05	59.21
KRH47705	Soybean	nucleus	59.79	59.18
Zm00001d020593_P002	Maize	nucleus, plastid	56.81	57.03
KXG35687	Sorghum	nucleus	56.68	56.83
HORVU5Hr1G063000.2	Barley	plastid	56.81	56.81
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	56.94	56.72
GSMUA_Achr3P05790_001	Banana	nucleus	56.55	56.55
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	56.94	56.28
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	56.81	56.15
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	56.81	56.15
Zm00001d005794_P009	Maize	nucleus, plastid	56.03	55.46
GSMUA_Achr11P...	Banana	nucleus	51.75	54.96
KXG25261	Sorghum	nucleus	52.92	54.47
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	52.27	53.81
Os09t0434100-01	Rice	plastid	19.97	52.2
Os08t0451400-01	Rice	nucleus, plastid	47.34	47.96
Os08t0451700-03	Rice	plastid	28.27	46.98
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.15	40.0
Os08t0361000-01	Rice	mitochondrion, plastid	9.86	39.38
Os08t0451500-01	Rice	mitochondrion	7.52	34.94

Protein Annotations

Gene3D:1.10.150.60	EntrezGene:100775894	MapMan:15.5.25	Gene3D:3.30.40.10	UniProt:A0A0R0G2Y7	EMBL:ACUP02009368
EMBL:ACUP02009369	InterPro:ARID_dom	InterPro:ARID_dom_sf	EnsemblPlantsGene:GLYMA_15G188300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046872	InterPro:IPR001606	InterPro:IPR013083	InterPro:IPR036431	EnsemblPlants:KRH12701	ProteinID:KRH12701
ProteinID:KRH12701.1	PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970	PANTHER:PTHR22970:SF40	SMART:SM01014
SUPFAM:SSF46774	SUPFAM:SSF57903	UniParc:UPI0006ED6FF7	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:19668635..19677619

Molecular Weight (calculated)

85337.8 Da

IEP (calculated)

8.272

GRAVY (calculated)

-0.319

Length

771 amino acids

Sequence
(BLAST)

001: MTTTINFYHF PSPPYSISLG FYYIKRGVSR HCSLLAVLSG KSRDIKQKQK QGTASEDQFP YPFPELSSSG RLEVKVLTKP TADELGRSLE QLQPDFVYLQ
101: GQQLEDSEEI GPLVWEDFDL SVPEALCGLF SSKIPNTVYL ETPKGEKLAE ALLNKGVPYT IYWKNDFSKY AASHFRHSFF SVAQSTSSHT WDAFQLALAS
201: FRLYCVQNNV LPSNSHKGAG KLGPQILGVP PNIDVSPCVA DMKEEEGSPE TISSLKIYDD DVNMRFLICG VPCTLDACLL GSLEDGLNAL LFAEIRGCKL
301: HNRTSATPPP LQAGTFSRGV VTMRCDISTC SSAHISLLVS GSADTCFNDQ LLENHIKKEL IEKSQLVQAF PNHQQSKAPS SEPRRSASVA CGSSVFEVCM
401: RVPAWASQVL RQLAPNLAYR SLVMLGIASI QALPVASFSK DDAERLLFFC TRQEKENCPK DHVFSGIPSW LKPPPPSRKR SEPCSSSKSI NASGRGVEAI
501: GSHRQKFIVA SMRPIPHSNR HKILPFSGLS EGTRYDGDHG KSNLPLALIK HNVSGPTSVT NRKSVSNSFQ AHQIISLNPL PMKKHGCDRA PIRACSEEEF
601: LRDVMQFLIL RGHNRLIPPG GLSEFPDAIL NAKRLDLFNL YREVVSRGGF HVGNGINWKG QVFSKMRNHT MTNRMTGVGN TLKRHYETYL LEYELSHDDV
701: DGECCLMCHS SAAGDWVNCG VCGEWAHFGC DRRQGLGAFK DYAKTDGLEY VCPRCSALKF SKKSQKTANG Y

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.