Factsheet for VIT_11s0016g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0434000-01	Rice	cytosol	9.05	72.83
VIT_09s0002g00430.t01	Wine grape	nucleus	76.08	72.74
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	69.05	68.41
CDY12335	Canola	nucleus	67.43	67.34
Bra034957.1-P	Field mustard	nucleus	67.3	67.21
KRH37566	Soybean	endoplasmic reticulum, golgi	69.32	66.45
KRH12701	Soybean	mitochondrion, nucleus, vacuole	68.78	66.02
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	66.76	63.82
GSMUA_Achr3P05790_001	Banana	nucleus	66.35	63.68
GSMUA_Achr11P...	Banana	nucleus	60.27	61.43
Zm00001d020593_P002	Maize	nucleus, plastid	63.38	61.07
KXG35687	Sorghum	nucleus	63.38	60.99
HORVU5Hr1G063000.2	Barley	plastid	63.51	60.96
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	63.78	60.51
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	63.51	60.26
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	63.38	60.13
Zm00001d005794_P009	Maize	nucleus, plastid	62.7	59.56
KXG25261	Sorghum	nucleus	60.0	59.28
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	59.19	58.48
Os09t0434100-01	Rice	plastid	22.03	55.25
Os08t0451400-01	Rice	nucleus, plastid	52.43	50.99
Os08t0451700-03	Rice	plastid	30.27	48.28
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.73	43.75
Os08t0361000-01	Rice	mitochondrion, plastid	10.54	40.41
Os08t0451500-01	Rice	mitochondrion	8.24	36.75

Protein Annotations

Gene3D:1.10.150.60	EntrezGene:100262830	wikigene:100262830	MapMan:15.5.25	Gene3D:3.30.40.10	EMBL:AM462892
InterPro:ARID_dom	InterPro:ARID_dom_sf	ProteinID:CAN61485	ProteinID:CAN61485.1	ProteinID:CCB51364	ProteinID:CCB51364.1
UniProt:F6HGZ6	EMBL:FN595756	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR001606
InterPro:IPR013083	InterPro:IPR036431	EntrezGene:LOC100262830	wikigene:LOC100262830	PFAM:PF01388	PFscan:PS51011
PANTHER:PTHR22970	PANTHER:PTHR22970:SF40	SMART:SM01014	SUPFAM:SSF46774	SUPFAM:SSF57903	TIGR:TC56188
UniParc:UPI0002107F53	ArrayExpress:VIT_11s0016g00370	EnsemblPlantsGene:VIT_11s0016g00370	EnsemblPlants:VIT_11s0016g00370.t01	unigene:Vvi.13806	RefSeq:XP_002277324
RefSeq:XP_002277324.1	RefSeq:XP_002277324.2	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:385438..394989

Molecular Weight (calculated)

81133.3 Da

IEP (calculated)

7.977

GRAVY (calculated)

-0.192

Length

740 amino acids

Sequence
(BLAST)

001: MMFHVQAASR NHCALLAVVC GKIPVSEDQQ QHPYPFPELV SSGRLEVQIL KNPSIHEFQR SLESLEPNFL YLQGEQLPGS EEIGSLTWGG VDLSSAEALV
101: ELFGPTLPTT VYLETPNGEK LAKALHSKGV SYVIYWKNAF SCYAACHFRQ ALFSVVQSSC SHTWDAFQLA HASFRLYCVQ NNTVPSNNQK VSGKLGPCLL
201: GDPPKINVVP PEVDEEESLP ATLPVIKIYD ADVSMRFLVC GAPSALDACL LGSLEDGLNA LLCIEIRGSK LHNRVSAPPP PLQAGTFSRG VVTMRCDLST
301: CSSAHISLLV SGSAQTCLND QLLESYIKNE LIEKSQLVHA VPSCEESKLS SSEPRRSASI ACGASVFEVR IKVPTWASQV LRQLAPDVSY RSLVTLGIAS
401: IQGLSVASFE KDDADRLLFF CTRHAKQLNQ NNSILPRPPS WLIAPPASRK RSGPCHETKP SGYKVLGGVN GGVLQQKPKI AAMRPIPHTR NHKMLPFSGI
501: SEASRCDGDQ AKGNLSVVPA KHNGTTPVTH RKLLSSSFQA QQIISLNPLP LKKHGCGRSP IQICSEEEFL RDVMQFLILR GHTRLVPQGG LAEFPDAILN
601: AKRLDLYNLY REVVSRGGFH VGNGINWKGQ VFSKMRNHTL TNRMTGVGNT LKRHYETYLL EYELAHDDVD GECCLLCHSS AAGDWVNCGI CGEWAHFGCD
701: RRQGLGAFKD YAKTDGLEYI CPHCSITNFQ KKSQKTANGY

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [cytosol,nucleus,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.