Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020593_P002 | Maize | nucleus, plastid | 97.53 | 97.66 |
| Zm00001d005794_P009 | Maize | nucleus, plastid | 96.1 | 94.87 |
| Os09t0434100-01 | Rice | plastid | 33.16 | 86.44 |
| HORVU5Hr1G063000.2 | Barley | plastid | 86.09 | 85.86 |
| TraesCS5A01G216100.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 86.48 | 85.26 |
| TraesCS5B01G214600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 86.35 | 85.13 |
| TraesCS5D01G224100.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 86.09 | 84.87 |
| KXG25261 | Sorghum | nucleus | 70.87 | 72.76 |
| KXG38052 | Sorghum | cytosol, extracellular, nucleus | 7.28 | 70.0 |
| GSMUA_Achr3P05790_001 | Banana | nucleus | 65.8 | 65.63 |
| VIT_11s0016g00370.t01 | Wine grape | cytosol | 60.99 | 63.38 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 62.94 | 62.53 |
| GSMUA_Achr11P... | Banana | nucleus | 57.61 | 61.02 |
| VIT_09s0002g00430.t01 | Wine grape | nucleus | 60.99 | 60.59 |
| PGSC0003DMT400074246 | Potato | cytosol, mitochondrion, nucleus, vacuole | 59.04 | 58.96 |
| Solyc12g049570.1.1 | Tomato | nucleus | 58.91 | 58.75 |
| KRH37566 | Soybean | endoplasmic reticulum, golgi | 58.13 | 57.9 |
| AT3G43240.1 | Thale cress | cytosol, nucleus, vacuole | 55.79 | 57.43 |
| CDY12335 | Canola | nucleus | 55.01 | 57.09 |
| Bra034957.1-P | Field mustard | nucleus | 54.88 | 56.95 |
| KRH06271 | Soybean | nucleus | 57.74 | 56.78 |
| KRH12701 | Soybean | mitochondrion, nucleus, vacuole | 56.83 | 56.68 |
| KRH47705 | Soybean | nucleus | 57.09 | 56.35 |
Protein Annotations
| Gene3D:1.10.150.60 | MapMan:15.5.25 | Gene3D:3.30.40.10 | UniProt:A0A1B6QCN5 | InterPro:ARID_dom | InterPro:ARID_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR001606 | InterPro:IPR013083 | InterPro:IPR036431 |
| EnsemblPlants:KXG35687 | ProteinID:KXG35687 | ProteinID:KXG35687.1 | PFAM:PF01388 | PFscan:PS51011 | PANTHER:PTHR22970 |
| PANTHER:PTHR22970:SF40 | SMART:SM01014 | EnsemblPlantsGene:SORBI_3002G211800 | SUPFAM:SSF46774 | SUPFAM:SSF57903 | UniParc:UPI0001C80DE9 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:60425814..60433002
Molecular Weight (calculated)
84866.7 Da
IEP (calculated)
7.993
GRAVY (calculated)
-0.286
Length
769 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHQIQSFSR NNCVLLAVLC GKYAEKRAPA ARSGLEAKRP RPSYPFPELS SAGRLEVHTL FNPTPEQFLE AQRVVQPNFL YIQGQQLEDE KEIGSLVWGD
101: ADVSDPQAFS TLISPPFPTI VYLEVPIGEK LAQAVHSKGI PYVIYWRNSF SSYAASHFRH ALMSVVQSSV SHTWDAFQLA HASFRLYCVR NNHVQSVKLG
201: PRLLGDAPKI NISPPETEMV DEEGSSEVTP AIKIYDEVIN MKLLLCGVPC NLDPCLLGSL EDGLNALLNI EIRGSKLQNR ISASPPPLEA ASLPRGMVTM
301: RCDITTCSIS HVSLLVSGSA QTCFDDQLLE SHIKNEIIEK SQLVRALSNS EDKLPSSEPL TSMSTACGAS TFEVWMSLPK WAAQVLKHLA PDIQYRSLVA
401: LGIGCINGTP VASFERRDAD RLLFFCTSQC KDLANENGPY FHLPRWSASL TKDRTKVGSE SKQSLLGANG VLEDKKHMME GPSSLSAVKA KLKPATMRPI
501: PHSRKQQMHP FMGLPETSLH ETSIVKPSLP VAPTVKHNSV SSAPTTHRKS TSGPSHTPSV IQLNPLPMKK HGCDRLPIQV CSEEDFLKDV MQFLIQRGHN
601: RLVPHGGLAE FPDAILNAKR LDLYNLYKEV VSRGGFYVGN GINWKGQVFS KMRNHTATNR MTGVGNTLKR HYETYLLEYE LAHDDVDGEC CLLCHSSAPG
701: DWVNCGLCGE WAHFGCDRRQ GLGTFKDYAK TDGLEYICPH CSLANYKKKP PPPKAANGFS NTASVPRNV
101: ADVSDPQAFS TLISPPFPTI VYLEVPIGEK LAQAVHSKGI PYVIYWRNSF SSYAASHFRH ALMSVVQSSV SHTWDAFQLA HASFRLYCVR NNHVQSVKLG
201: PRLLGDAPKI NISPPETEMV DEEGSSEVTP AIKIYDEVIN MKLLLCGVPC NLDPCLLGSL EDGLNALLNI EIRGSKLQNR ISASPPPLEA ASLPRGMVTM
301: RCDITTCSIS HVSLLVSGSA QTCFDDQLLE SHIKNEIIEK SQLVRALSNS EDKLPSSEPL TSMSTACGAS TFEVWMSLPK WAAQVLKHLA PDIQYRSLVA
401: LGIGCINGTP VASFERRDAD RLLFFCTSQC KDLANENGPY FHLPRWSASL TKDRTKVGSE SKQSLLGANG VLEDKKHMME GPSSLSAVKA KLKPATMRPI
501: PHSRKQQMHP FMGLPETSLH ETSIVKPSLP VAPTVKHNSV SSAPTTHRKS TSGPSHTPSV IQLNPLPMKK HGCDRLPIQV CSEEDFLKDV MQFLIQRGHN
601: RLVPHGGLAE FPDAILNAKR LDLYNLYKEV VSRGGFYVGN GINWKGQVFS KMRNHTATNR MTGVGNTLKR HYETYLLEYE LAHDDVDGEC CLLCHSSAPG
701: DWVNCGLCGE WAHFGCDRRQ GLGTFKDYAK TDGLEYICPH CSLANYKKKP PPPKAANGFS NTASVPRNV
001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
Arabidopsis Description
ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [cytosol,nucleus,vacuole]
SUBAcon: [cytosol,nucleus,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.