Factsheet for Solyc12g049570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	96.76	96.88
VIT_09s0002g00430.t01	Wine grape	nucleus	74.71	74.42
Os09t0434000-01	Rice	cytosol	8.17	68.48
KRH06271	Soybean	nucleus	65.24	64.32
KRH47705	Soybean	nucleus	64.59	63.93
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	61.35	61.11
GSMUA_Achr3P05790_001	Banana	nucleus	60.83	60.83
Zm00001d020593_P002	Maize	nucleus, plastid	58.75	58.98
KXG35687	Sorghum	nucleus	58.75	58.91
GSMUA_Achr11P...	Banana	nucleus	55.25	58.68
HORVU5Hr1G063000.2	Barley	plastid	57.85	57.85
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	58.11	57.44
Zm00001d005794_P009	Maize	nucleus, plastid	57.98	57.38
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	57.72	57.05
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	57.72	57.05
KXG25261	Sorghum	nucleus	54.22	55.81
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	54.09	55.67
Os09t0434100-01	Rice	plastid	20.23	52.88
Os08t0451400-01	Rice	nucleus, plastid	48.51	49.15
Os08t0451700-03	Rice	plastid	29.05	48.28
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.67	45.0
Os08t0451500-01	Rice	mitochondrion	7.65	35.54
Os08t0361000-01	Rice	mitochondrion, plastid	8.82	35.23

Protein Annotations

Gene3D:1.10.150.60	MapMan:15.5.25	Gene3D:3.30.40.10	InterPro:ARID_dom	InterPro:ARID_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR001606	InterPro:IPR013083	InterPro:IPR036431	UniProt:K4DFN7
PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970	PANTHER:PTHR22970:SF40	SMART:SM00249	SMART:SM01014
SUPFAM:SSF46774	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc12g049570.1	EnsemblPlants:Solyc12g049570.1.1	UniParc:UPI0002769B7E	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

No Description!

Coordinates

chr12:+:36665761..36673571

Molecular Weight (calculated)

84807.3 Da

IEP (calculated)

7.216

GRAVY (calculated)

-0.214

Length

771 amino acids

Sequence
(BLAST)

001: MFHCQGASRQ SCSLLAVLCG RTSEYDQKKD VHDGKPRYCF PEIVSSGRLE VQVLKNPSTD EFHKVLDSWQ PNIVYLQGEH LSNDEVGSLV WGGLDLSSAE
101: AISGLFSSVL PTAVYLELPN GEKLAEALHA KGIPYVMYWK SAFSCYAASH FRHAFLCVAQ SSTCHVWDAF QLAHASFRLY CVRNNFALSE MSQRDSDNVG
201: PHLLGDPPNI DVPLPEAGPE DDEESNSDAL PAIKIYDDDV TMRFLVCGLP CSLDECLLGS IADGLNALLN IEMRGSKLHN RVSALPPPLQ AGTFSRGVVT
301: MRCDLSTSSS AHISLLVSGS AQTCFDDLLL ENHIKSEIIE NSTLVHVLPS DEENRPPISA PRRSMSVACG SEVFEVCMKV PMWASQVLRQ LAPDVSYRSL
401: VALGIASIQG LAVASFEKDD AQRLLFFCTK QGKDGFFGNF KMGNPPAWLR PPAPSRKRSD FYQGASYICQ NGLTPGNHVA VKEEKESRLG NGVATPLVTA
501: RQKLKVAAMR PIPHVRHQKM LPFSRISELD SLDGNQVKTN LPIIPSSTKG SNVGVTPATH RKSASSSHQA KQIISLNPLP LKKHGCGRSP IHVCSEEEFL
601: KDVMQFLILR GHTRLIPQSG IAEFPDAILN AKRLDLFNLY REVVSRGGFH VGNGINWKGQ VFSKMRNHTV TNRMTGVGNT LKRHYETYLL EYELAHDDVD
701: GECCLLCNSS AAGDWVNCGI CGEWAHFGCD RRPGLGAFKD YAKTDGLEYI CPQCSVTNFK KKVLRTANGY S

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.