CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47705	Soybean	nucleus	93.61	93.97
Os09t0434000-01	Rice	cytosol	9.08	77.17
VIT_09s0002g00430.t01	Wine grape	nucleus	69.31	70.03
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	65.6	66.62
Solyc12g049570.1.1	Tomato	nucleus	64.32	65.24
KRH12701	Soybean	mitochondrion, nucleus, vacuole	59.21	60.05
KRH37566	Soybean	endoplasmic reticulum, golgi	59.21	59.97
GSMUA_Achr3P05790_001	Banana	nucleus	57.93	58.75
Zm00001d020593_P002	Maize	nucleus, plastid	57.03	58.07
KXG35687	Sorghum	nucleus	56.78	57.74
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	56.78	57.36
HORVU5Hr1G063000.2	Barley	plastid	55.63	56.42
Zm00001d005794_P009	Maize	nucleus, plastid	56.14	56.35
GSMUA_Achr11P...	Banana	nucleus	52.17	56.2
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	56.01	56.15
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.88	56.03
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	55.75	55.9
KXG25261	Sorghum	nucleus	52.94	55.27
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	52.3	54.61
Os09t0434100-01	Rice	plastid	18.54	49.15
Os08t0451400-01	Rice	nucleus, plastid	46.68	47.96
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.86	47.5
Os08t0451700-03	Rice	plastid	26.73	45.04
Os08t0361000-01	Rice	mitochondrion, plastid	8.57	34.72
Os08t0451500-01	Rice	mitochondrion	6.52	30.72

Protein Annotations

Gene3D:1.10.150.60	EntrezGene:100816540	MapMan:15.5.25	Gene3D:3.30.40.10	EMBL:ACUP02009822	InterPro:ARID_dom
InterPro:ARID_dom_sf	EnsemblPlantsGene:GLYMA_16G013100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	UniProt:I1MK64
InterPro:IPR001606	InterPro:IPR013083	InterPro:IPR036431	EnsemblPlants:KRH06271	ProteinID:KRH06271	ProteinID:KRH06271.1
PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970	PANTHER:PTHR22970:SF40	SMART:SM00501	SMART:SM01014
SUPFAM:SSF46774	SUPFAM:SSF57903	UniParc:UPI000233B626	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr16:+:1134316..1141935

Molecular Weight (calculated)

86598.1 Da

IEP (calculated)

6.748

GRAVY (calculated)

-0.319

Length

782 amino acids

Sequence
(BLAST)

001: MFPFHSQGTP KHTCTLLAVT CRTSSAEHKL SHAQRTYPFP ELVSAGRLEV QTLCSPEKEQ FRKVLESFQP NFVYLRGDQL ENGEVGSLVW QGVELSTCED
101: ITELFGSTLP TAVYLEIPNG ESFAEALHLK GIPYVIFWKN TFSCYAACHF RQAFLSVVQS SSTHTWDAFH LARASFELYC VQNNQVLPSD SDDASSEMGP
201: HLLGDCLKIN VDPPEIDEED DDESSSGSLP AIKIHEDEVN LRFLICGAPS TVDESLLRSL EDGLRALLTI EIRGCKLHGK FSAPPPPLQA AAFSRGVVTM
301: RCDISTCSSA HISLLVSGSA QTCFNDQLLE NHIKNEIIEK SQLVHAQLNN EGNKENICEP RRSASIACGA SVFEICMKLP QWALQILRQL APEVSYRSLV
401: ALGIASIQGL PIASFEKDDA ERLLFFYQNC EKDSCTNKNN IIFSSPPGWL KPPPPTRKRC EPRQEASPGL HEGVFAGQGG VCKLNEEEKD RKIVNGISMP
501: LTPARQRLKV SAMRPIPHIR RHRMTPFCGP SETDGFDGTQ VEAILPLVAP TKRTSIGSTS GTHRKSFSSA AQSKQVISLN PLPLKKHGCG RGPVQTCSEE
601: EFLKDVMEFL ILRGHNRLIP QGGLTEFPDA ILNGKRLDLY NLYKEVVTRG GFHVGNGINW KGQIFSKMRN YTTTNRMTGV GNTLKRHYET YLLEYELAHD
701: DVDGECCLLC HSSAAGDWVN CGICGEWAHF GCDRRQGLGA FKDYAKTDGL EYICPHCSVT NFKKKQNVAN GYSQGSMSSR PL

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [cytosol,nucleus,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.