Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g049570.1.1 | Tomato | nucleus | 96.88 | 96.76 |
| VIT_09s0002g00430.t01 | Wine grape | nucleus | 74.94 | 74.55 |
| Os09t0434000-01 | Rice | cytosol | 8.18 | 68.48 |
| KRH06271 | Soybean | nucleus | 66.62 | 65.6 |
| KRH47705 | Soybean | nucleus | 66.1 | 65.34 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 61.43 | 61.11 |
| GSMUA_Achr3P05790_001 | Banana | nucleus | 60.78 | 60.7 |
| Zm00001d020593_P002 | Maize | nucleus, plastid | 58.96 | 59.11 |
| KXG35687 | Sorghum | nucleus | 58.96 | 59.04 |
| GSMUA_Achr11P... | Banana | nucleus | 55.32 | 58.68 |
| HORVU5Hr1G063000.2 | Barley | plastid | 57.66 | 57.59 |
| Zm00001d005794_P009 | Maize | nucleus, plastid | 58.18 | 57.51 |
| TraesCS5D01G224100.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 58.18 | 57.44 |
| TraesCS5A01G216100.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 57.92 | 57.18 |
| TraesCS5B01G214600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 57.79 | 57.05 |
| Zm00001d032096_P005 | Maize | cytosol, nucleus, vacuole | 54.55 | 56.07 |
| KXG25261 | Sorghum | nucleus | 54.42 | 55.94 |
| Os09t0434100-01 | Rice | plastid | 20.0 | 52.2 |
| Os08t0451400-01 | Rice | nucleus, plastid | 48.44 | 49.01 |
| Os08t0451700-03 | Rice | plastid | 28.96 | 48.06 |
| KXG38052 | Sorghum | cytosol, extracellular, nucleus | 4.55 | 43.75 |
| Os08t0451500-01 | Rice | mitochondrion | 7.66 | 35.54 |
| Os08t0361000-01 | Rice | mitochondrion, plastid | 8.83 | 35.23 |
Protein Annotations
| Gene3D:1.10.150.60 | EntrezGene:102586778 | MapMan:15.5.25 | Gene3D:3.30.40.10 | InterPro:ARID_dom | InterPro:ARID_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR001606 | InterPro:IPR013083 | InterPro:IPR036431 |
| UniProt:M1CTE0 | PFAM:PF01388 | EnsemblPlantsGene:PGSC0003DMG400028852 | PGSC:PGSC0003DMG400028852 | EnsemblPlants:PGSC0003DMT400074246 | PFscan:PS51011 |
| PANTHER:PTHR22970 | PANTHER:PTHR22970:SF40 | SMART:SM00249 | SMART:SM01014 | SUPFAM:SSF46774 | SUPFAM:SSF57903 |
| UniParc:UPI000296B91F | RefSeq:XP_006362097.1 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028852]
Coordinates
chr12:-:53040417..53049498
Molecular Weight (calculated)
84671.0 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.226
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHCQGTSRQ SCSLLAVLCG STSEYDQKKD VHDGKPRYCF PEIVSSGRLE VQVLKNPSTD EFHKVLDSWQ PNIVYLQGEH LSNDEVGSLV WGGLDLSSAE
101: AISGLFSSAL PTAVYLELPN GEKLAEALHA KGIPYVMYWK SAFSCYAASH FRHAFLCVAQ SSTCHVWDAF QLAQASFRLY CVQNNFVLPE MSQRDSDNMG
201: PHLLGDPPNI DVPPPEAGPD DDEESNSDAL PAIKIYDDDV TMRFLVCGLP CSLDECLLGS IADGLNALLN IEMRGSKLHN RVSALPPPLQ AGTFSRGVVT
301: MRCDLSTSSS AHISLLVSGS AQTCFDDLLL ENHIKSEIIE NSTLVHVLPS DEENRPPISA PRRSMSVACG SEVFEVCMKV PMWASQVLRQ LAPDVSYRSL
401: VALGIASIQG LAVASFEKDD AQRLLFFYTK QGKDGFFGNF KIGDPPAWLR PPAPSRKRSD FYQGASYICQ NGSTPGNHVA VKEEKESRLG NGVATPLVTA
501: RQKLKVAAMR PIPHVRHQKM LPFSRISELD SLDGNQVKTN LPIIPSTKGS NVGVTPVTHR KSASSSHQAK QIISLNPLPL KKHGCGRSPI HVCSEEEFLK
601: DVMQFLILRG HTRLIPQGGL AEFPDAILNA KRLDLFNLYR EVVSRGGFHV GNGINWKGQV FSKMRNHTVT NRMTGVGNTL KRHYETYLLE YELAHDDVDG
701: ECCLLCNSSA AGDWVNCGIC GEWAHFGCDR RPGLGAFKDY AKTDGLEYIC PQCSVTNFKK KVLRTANGYS
101: AISGLFSSAL PTAVYLELPN GEKLAEALHA KGIPYVMYWK SAFSCYAASH FRHAFLCVAQ SSTCHVWDAF QLAQASFRLY CVQNNFVLPE MSQRDSDNMG
201: PHLLGDPPNI DVPPPEAGPD DDEESNSDAL PAIKIYDDDV TMRFLVCGLP CSLDECLLGS IADGLNALLN IEMRGSKLHN RVSALPPPLQ AGTFSRGVVT
301: MRCDLSTSSS AHISLLVSGS AQTCFDDLLL ENHIKSEIIE NSTLVHVLPS DEENRPPISA PRRSMSVACG SEVFEVCMKV PMWASQVLRQ LAPDVSYRSL
401: VALGIASIQG LAVASFEKDD AQRLLFFYTK QGKDGFFGNF KIGDPPAWLR PPAPSRKRSD FYQGASYICQ NGSTPGNHVA VKEEKESRLG NGVATPLVTA
501: RQKLKVAAMR PIPHVRHQKM LPFSRISELD SLDGNQVKTN LPIIPSTKGS NVGVTPVTHR KSASSSHQAK QIISLNPLPL KKHGCGRSPI HVCSEEEFLK
601: DVMQFLILRG HTRLIPQGGL AEFPDAILNA KRLDLFNLYR EVVSRGGFHV GNGINWKGQV FSKMRNHTVT NRMTGVGNTL KRHYETYLLE YELAHDDVDG
701: ECCLLCNSSA AGDWVNCGIC GEWAHFGCDR RPGLGAFKDY AKTDGLEYIC PQCSVTNFKK KVLRTANGYS
001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
Arabidopsis Description
ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]
SUBAcon: [vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.