Factsheet for GSMUA_Achr11P09250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	74.24	69.64
Os09t0434000-01	Rice	cytosol	8.68	68.48
GSMUA_Achr3P05790_001	Banana	nucleus	64.88	61.09
VIT_11s0016g00370.t01	Wine grape	cytosol	61.43	60.27
KXG35687	Sorghum	nucleus	61.02	57.61
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	59.23	57.41
Zm00001d020593_P002	Maize	nucleus, plastid	60.47	57.16
Zm00001d005794_P009	Maize	nucleus, plastid	60.88	56.74
KXG25261	Sorghum	nucleus	58.13	56.34
HORVU5Hr1G063000.2	Barley	plastid	59.64	56.16
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	60.33	56.15
VIT_09s0002g00430.t01	Wine grape	nucleus	59.78	56.07
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.19	56.03
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	59.92	55.77
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	58.68	55.32
Solyc12g049570.1.1	Tomato	nucleus	58.68	55.25
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	55.1	53.55
CDY12335	Canola	nucleus	54.13	53.04
Bra034957.1-P	Field mustard	nucleus	53.86	52.77
KRH37566	Soybean	endoplasmic reticulum, golgi	55.79	52.46
KRH06271	Soybean	nucleus	56.2	52.17
KRH12701	Soybean	mitochondrion, nucleus, vacuole	54.96	51.75
KRH47705	Soybean	nucleus	55.37	51.6
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.96	45.0

Protein Annotations

Gene3D:1.10.150.60	MapMan:15.5.25	Gene3D:3.30.40.10	InterPro:ARID_dom	InterPro:ARID_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr11G09250_001	EnsemblPlants:GSMUA_Achr11P09250_001	EnsemblPlants:GSMUA_Achr11T09250_001	InterPro:IPR001606
InterPro:IPR013083	InterPro:IPR036431	UniProt:M0RQQ5	PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970
PANTHER:PTHR22970:SF40	SMART:SM00249	SMART:SM01014	SUPFAM:SSF46774	SUPFAM:SSF57903	UniParc:UPI00029501C0
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT-rich interaction region, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G09250_001]

Coordinates

chr11:+:7130357..7139047

Molecular Weight (calculated)

80644.7 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.289

Length

726 amino acids

Sequence
(BLAST)

001: MHQTHGFSKQ TCRLVAVLCG KFTGKRNEVK RQHPYPFPEL VSSGRLEVHT LVNPSVDSFR EAQKSLKPNI LYFQGSELEN EEEIGTLVWG DLDVSKPDMF
101: SALIDPPLPT TVYLEVPNGE KIAQALHSKG TPYVIYWKNA VSSYTASHFR QALLSVLQSS CSHTWDAFQL AHASFRLYCV RNNYVLPDNG QKESSNHGPQ
201: LLGDAPKINI VLPDRAAEEG EETSSDSLPV TKINDGDVDM RLLICGLPCT LDACLLGSLE DGINALLNIE IRGSKLNNRM SVAHPLQDGP LSDAVVTMRC
301: DLTTCSSTHT SILVSDSVQS CLNDQVLENH IKNELIEKSQ LVHAIPDCDQ NKPPLYESLP SVSVACGASA FEVRMKVPSW AVQVLKQLAS EVSYRSLVTL
401: GIASIQGIPV ASFEKEDADR LLFLWNRQRK EIIFRHELSS LPPLSSSVVT KRSKTFSEAK PIAFSQTMKE NGIFLNDVAT MKPVPCSRQR MLPLGIQDDV
501: PTASSKKNNT IRVPLTPRTS MSSSFRPKQK IVPQNPLPLK KHGCNRSSIQ VCSEVEFLED VMQFLVIRGH NRLVPQGGIS KFPDAVLNAK RLDLFNLYRQ
601: VVSRGGFYVG NGINWKGQIF SKMQNYTASN KMTGVGNTLK KHYEMYLLEY ELAHNDVDGE CCLLCRSSAP GDWVSCGSCS EWAHLGCDRR QGLATFKDYA
701: KTDGLEYICP NCSVNNRKMK SQKVAK

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.