Factsheet for Bra034957.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12335	Canola	nucleus	98.92	98.92
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	90.69	89.96
VIT_11s0016g00370.t01	Wine grape	cytosol	67.21	67.3
Os09t0434000-01	Rice	cytosol	8.23	66.3
KRH37566	Soybean	endoplasmic reticulum, golgi	63.83	61.27
KRH12701	Soybean	mitochondrion, nucleus, vacuole	62.89	60.44
GSMUA_Achr3P05790_001	Banana	nucleus	58.84	56.55
Zm00001d020593_P002	Maize	nucleus, plastid	57.62	55.6
KXG35687	Sorghum	nucleus	56.95	54.88
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	57.09	54.65
HORVU5Hr1G063000.2	Barley	plastid	56.68	54.47
Zm00001d005794_P009	Maize	nucleus, plastid	56.95	54.17
KXG25261	Sorghum	nucleus	54.66	54.07
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	56.82	53.97
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	54.52	53.94
GSMUA_Achr11P...	Banana	nucleus	52.77	53.86
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	56.55	53.72
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	56.41	53.59
Os09t0434100-01	Rice	plastid	18.62	46.78
Os08t0451400-01	Rice	nucleus, plastid	47.91	46.65
Os08t0451700-03	Rice	plastid	27.67	44.18
KXG38052	Sorghum	cytosol, extracellular, nucleus	4.18	38.75
Os08t0361000-01	Rice	mitochondrion, plastid	9.18	35.23
Os08t0451500-01	Rice	mitochondrion	6.88	30.72

Protein Annotations

Gene3D:1.10.150.60	MapMan:15.5.25	Gene3D:3.30.40.10	InterPro:ARID_dom	InterPro:ARID_dom_sf	EnsemblPlantsGene:Bra034957
EnsemblPlants:Bra034957.1	EnsemblPlants:Bra034957.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR001606
InterPro:IPR013083	InterPro:IPR036431	UniProt:M4F1L1	PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970
PANTHER:PTHR22970:SF40	SMART:SM00249	SMART:SM01014	SUPFAM:SSF46774	SUPFAM:SSF57903	UniParc:UPI000253E5A0
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G43240 (E=0.0) | ARID/BRIGHT DNA-binding domain-containing protein

Coordinates

chrScaffold000100:-:155951..160026

Molecular Weight (calculated)

82187.7 Da

IEP (calculated)

7.195

GRAVY (calculated)

-0.309

Length

741 amino acids

Sequence
(BLAST)

001: MMFHAQSRCN VLAVVSGEHC DNQKGEAHQP RYPFPDLSSS GRLKFQVLNN PTTEEFQVAI NSSAPDIVYL QGEQSGDTDQ VGPLAFRYAD FSTPDALFTL
101: FGSSIPTTVY LELPNGEELA QALYSKGAQY VIYWKKVFSK YAACHFRHAL FSIIQSSCSD TWDAFQVAEA SFRLYCTSNS DLLSSDMNRK INYEMGPCPC
201: LLGDPPKIDV VTPGADELED ENSLESLPSI NIYDEDVTVR FLLCGPPCTV DTFLLGSLVD GLNALLRIEM RGSKLHNRSS APAPPLQAGT FTRGVVTMRC
301: DISTCSSAHV SMLVSGNAQT CFSDQLLENH IKHEVVEKIQ LVHSVVNSEE TKQVFSEPRK SASIACGASV YEVSMQVPTW ALQVLRQLAP DVSYRSLVVL
401: GVASIQGLSV ASFEKDDAQR LLFFCGKQIS DTTNHDALLS QIPHWLTPPL PSRKRSEPCR ENKEMENGRP TSKKINVAAL RPIPHTRRHK MIPFSGYSEI
501: GRFDGDHTKG SLPMPPKHGA SGGTPVTHRK AFSGSYQRKQ IISLNPLPLK KHDCGRAHIQ ICSEEEFLRD VMQFLVIRGH SRLVPPGGLA EFPDAVLNSK
601: RLDLFNLYRE VVLRGGFHVG NGINWKGQVF SKMRNHTLTN RMTGVGNTLK RHYETYLLEY EYAHDDVDGE CCLICRSSTA GDWVNCGSCG EWAHFGCDRR
701: PGLGAFKDYA KTDGLEYVCP NCSVSNYRKK SQKSSNGLLV P

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.