Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G214600.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 99.36 | 99.36 |
| TraesCS5D01G224100.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 99.1 | 99.1 |
| HORVU5Hr1G063000.2 | Barley | plastid | 96.54 | 97.67 |
| KXG35687 | Sorghum | nucleus | 85.26 | 86.48 |
| Zm00001d020593_P002 | Maize | nucleus, plastid | 84.87 | 86.2 |
| Zm00001d005794_P009 | Maize | nucleus, plastid | 84.1 | 84.21 |
| Os09t0434100-01 | Rice | plastid | 31.28 | 82.71 |
| GSMUA_Achr3P05790_001 | Banana | nucleus | 64.49 | 65.24 |
| VIT_11s0016g00370.t01 | Wine grape | cytosol | 60.51 | 63.78 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 61.03 | 61.5 |
| GSMUA_Achr11P... | Banana | nucleus | 56.03 | 60.19 |
| VIT_09s0002g00430.t01 | Wine grape | nucleus | 59.49 | 59.95 |
| PGSC0003DMT400074246 | Potato | cytosol, mitochondrion, nucleus, vacuole | 57.18 | 57.92 |
| KRH37566 | Soybean | endoplasmic reticulum, golgi | 57.31 | 57.9 |
| Solyc12g049570.1.1 | Tomato | nucleus | 57.05 | 57.72 |
| AT3G43240.1 | Thale cress | cytosol, nucleus, vacuole | 54.49 | 56.89 |
| KRH12701 | Soybean | mitochondrion, nucleus, vacuole | 56.15 | 56.81 |
| CDY12335 | Canola | nucleus | 53.85 | 56.68 |
| Bra034957.1-P | Field mustard | nucleus | 53.72 | 56.55 |
| KRH06271 | Soybean | nucleus | 56.03 | 55.88 |
| KRH47705 | Soybean | nucleus | 55.13 | 55.2 |
Protein Annotations
| Gene3D:1.10.150.60 | MapMan:15.5.25 | Gene3D:3.30.40.10 | InterPro:ARID_dom | InterPro:ARID_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:IPR001606 | InterPro:IPR013083 | InterPro:IPR036431 |
| PFAM:PF01388 | PFscan:PS51011 | PANTHER:PTHR22970 | PANTHER:PTHR22970:SF40 | SMART:SM01014 | SUPFAM:SSF46774 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS5A01G216100 | EnsemblPlants:TraesCS5A01G216100.1 | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd15615 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:432437230..432442623
Molecular Weight (calculated)
85923.4 Da
IEP (calculated)
7.544
GRAVY (calculated)
-0.314
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQIQSLSRS CVLLAVLCGK HADKQQQRAP PGRSGPEAKR LRPSYPFPEL SSAGRLEVHT LVNPTPEQFL EAQRLVQPNF FYIQGQQLED EEIGSLVWGD
101: ADMSDPQSFV CLISPPFPTI VYLEVPIGEK LAQAVHSKGI PYVIYWRNSF SSYAASHFRN ALLSVVQSSV SHTWDSFQLA HASFRLYCVR NNHVQSVKLG
201: PRLLGDAPKV NVVTPENEMA EEEGSSSEVS PAIKIYDDDI NMKFLLCGVP SALVSFDILD DSCLLGSLED GLNALLNIEI RGSKLQNRIS ASPPPLEAAS
301: VPRGMVTMRC DMTTCSSSHV SLLVSGSAQT CFDDQLLESH IKNELIEKSQ LVRALPNSED KLSSTEPFTS MSTACGASTF EVWMTLPKWA AQVLKHLAPE
401: ISYRSLVALG VGCVNATPVA SFERQDADRL LFFCTGQRKD SAGEGGPYFH LPRWSASLTK DRAKTGSESK SNLLVVNGTS EDRKAPVEGP SSLTSFKGKL
501: KPATMRPIPH SRQQQMHPFM GFPEANVHET SQAKPNLPVA PPVKHHNSAP ASTTAHRKST SGPSHAQSII QLNPLPMKKH GCDRLPIQVC SEEDFLKDVM
601: QFLIQRGHHR LVPHGGLAEF PDAVLNAKRL DLYNLYKEVV SRGGFYVGNG INWKGQVFSK MRNHTVTNRM TGVGNTLKRH YETYLLEYEL SHDDVDGECC
701: LLCHSSAPGD WVNCGLCGEW AHFGCDRRQG LGTFKDYAKT DGLEYICPHC SIANYKKKPP PPQKVANGFA NTVLPVSRNV
101: ADMSDPQSFV CLISPPFPTI VYLEVPIGEK LAQAVHSKGI PYVIYWRNSF SSYAASHFRN ALLSVVQSSV SHTWDSFQLA HASFRLYCVR NNHVQSVKLG
201: PRLLGDAPKV NVVTPENEMA EEEGSSSEVS PAIKIYDDDI NMKFLLCGVP SALVSFDILD DSCLLGSLED GLNALLNIEI RGSKLQNRIS ASPPPLEAAS
301: VPRGMVTMRC DMTTCSSSHV SLLVSGSAQT CFDDQLLESH IKNELIEKSQ LVRALPNSED KLSSTEPFTS MSTACGASTF EVWMTLPKWA AQVLKHLAPE
401: ISYRSLVALG VGCVNATPVA SFERQDADRL LFFCTGQRKD SAGEGGPYFH LPRWSASLTK DRAKTGSESK SNLLVVNGTS EDRKAPVEGP SSLTSFKGKL
501: KPATMRPIPH SRQQQMHPFM GFPEANVHET SQAKPNLPVA PPVKHHNSAP ASTTAHRKST SGPSHAQSII QLNPLPMKKH GCDRLPIQVC SEEDFLKDVM
601: QFLIQRGHHR LVPHGGLAEF PDAVLNAKRL DLYNLYKEVV SRGGFYVGNG INWKGQVFSK MRNHTVTNRM TGVGNTLKRH YETYLLEYEL SHDDVDGECC
701: LLCHSSAPGD WVNCGLCGEW AHFGCDRRQG LGTFKDYAKT DGLEYICPHC SIANYKKKPP PPQKVANGFA NTVLPVSRNV
001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
Arabidopsis Description
ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]
SUBAcon: [vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.