Factsheet for Zm00001d005794_P009

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35687	Sorghum	nucleus	94.87	96.1
Zm00001d020593_P002	Maize	nucleus, plastid	94.35	95.7
Os09t0434100-01	Rice	plastid	32.48	85.76
HORVU5Hr1G063000.2	Barley	plastid	83.95	84.82
TraesCS5B01G214600.2	Wheat	cytosol, mitochondrion, nucleus, plastid	84.21	84.1
TraesCS5A01G216100.1	Wheat	cytosol, mitochondrion, nucleus, plastid	84.21	84.1
TraesCS5D01G224100.2	Wheat	cytosol, mitochondrion, nucleus, plastid	83.83	83.72
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	69.7	72.5
GSMUA_Achr3P05790_001	Banana	nucleus	64.44	65.11
VIT_11s0016g00370.t01	Wine grape	cytosol	59.56	62.7
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	61.62	62.02
GSMUA_Achr11P...	Banana	nucleus	56.74	60.88
VIT_09s0002g00430.t01	Wine grape	nucleus	59.05	59.43
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	57.51	58.18
Solyc12g049570.1.1	Tomato	nucleus	57.38	57.98
KRH37566	Soybean	endoplasmic reticulum, golgi	56.87	57.38
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	54.81	57.16
CDY12335	Canola	nucleus	54.3	57.09
Bra034957.1-P	Field mustard	nucleus	54.17	56.95
KRH06271	Soybean	nucleus	56.35	56.14
KRH12701	Soybean	mitochondrion, nucleus, vacuole	55.46	56.03
KRH47705	Soybean	nucleus	55.71	55.71

Protein Annotations

Gene3D:1.10.150.60	EntrezGene:103647451	MapMan:15.5.25	Gene3D:3.30.40.10	UniProt:A0A1D6EQU5	InterPro:ARID_dom
InterPro:ARID_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR001606	InterPro:IPR013083
InterPro:IPR036431	ProteinID:ONM22124.1	PFAM:PF01388	PFscan:PS51011	PANTHER:PTHR22970	PANTHER:PTHR22970:SF40
SMART:SM01014	SUPFAM:SSF46774	SUPFAM:SSF57903	UniParc:UPI000844C259	EnsemblPlantsGene:Zm00001d005794	EnsemblPlants:Zm00001d005794_P009
EnsemblPlants:Zm00001d005794_T009	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

ARID-transcription factor 2AT-rich interactive domain-containing protein 4

Coordinates

chr2:-:188896340..188907450

Molecular Weight (calculated)

86105.1 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.261

Length

779 amino acids

Sequence
(BLAST)

001: MSQIQSFSRN NCVLLVVLCG KYAEKRAPAA KSGLEAKRPR PSYPFPELSS AGRLEVHTLF NPTPEQFLEA QRVVQPNFLY IQGQQLEDEK EIGSLVWGDA
101: DVSDPQAFST LISPPFPTIV YLEVPIGEKL AQAVHSKGIP YVIYWRNSFS SYAASHFRHA LMSVVQSSVS HTWDAFQLAH ASFRLYCVRN NHVQSVKLGP
201: RLLGDSPKIN ISPPGTEMVD EEGSSEVTPA IKIYDEEINM KLLLCGVSCT LDPCLLGSLE DGLNALLNIE IRGSKLQNRI SASPPPLEAA SLPRGMVTMR
301: CDITTCSSSH VSLLVSGSAQ TCFDDQVYIP LSLDNCQLLE SHIKNEIIEK SQLVRALSNS EDKLPSSEPL TSMSTACGAS TFEVWMSLPK WAAQVLKHLA
401: PDISYRSLVA LGIGCINGTP VASFERRDAD RLLFFCTSQC KDLANENGPY FHLPRWSASL TKDRTKLGSE SKQNLLGANG VLEDKKHMME GPSSFSAVKA
501: KLKPATMRPI PHSQKQQMHP FMCLPETSFH ETSIVKPSLT VAPTVKHNSV SYAPTTHRKS TSGPSHTPSV IQLNPLPMKK HGCDRLSIQV CSEEDFLKDV
601: MQFLIQRGHN RLVPHGGLAE FPDAVLNAKR LDLYNLYKEV VSRGGFYVGN GINWKGQVFS KMRNHTATNR MTGVGNTLKR HYETYLLEYE LAHDDVDGEC
701: CLLCHSSAPG DWVNCGLCGE WAHFGCDRRQ GLGTFKDYAK TDGLEYICPH CSLANYKKPP LPPKVANGFS NTAYVPRSV

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.