CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0451700-03	Rice	plastid	62.5	10.78
KXG25261	Sorghum	nucleus	91.25	9.75
Zm00001d032096_P005	Maize	cytosol, nucleus, vacuole	90.0	9.61
KXG35687	Sorghum	nucleus	70.0	7.28
GSMUA_Achr3P05790_001	Banana	nucleus	55.0	5.71
GSMUA_Achr11P...	Banana	nucleus	45.0	4.96
KRH06271	Soybean	nucleus	47.5	4.86
VIT_09s0002g00430.t01	Wine grape	nucleus	46.25	4.78
VIT_11s0016g00370.t01	Wine grape	cytosol	43.75	4.73
Solyc12g049570.1.1	Tomato	nucleus	45.0	4.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	45.0	4.65
PGSC0003DMT400074246	Potato	cytosol, mitochondrion, nucleus, vacuole	43.75	4.55
KRH47705	Soybean	nucleus	43.75	4.49
CDY12335	Canola	nucleus	40.0	4.32
AT3G43240.1	Thale cress	cytosol, nucleus, vacuole	40.0	4.28
KRH37566	Soybean	endoplasmic reticulum, golgi	41.25	4.27
Bra034957.1-P	Field mustard	nucleus	38.75	4.18
KRH12701	Soybean	mitochondrion, nucleus, vacuole	40.0	4.15
Os08t0451500-01	Rice	mitochondrion	2.5	1.2
Os08t0451400-01	Rice	nucleus, plastid	10.0	1.05

Protein Annotations

EnsemblPlants:KXG38052	EnsemblPlantsGene:SORBI_3001G171700	PANTHER:PTHR22970	PANTHER:PTHR22970:SF1	ProteinID:KXG38052	ProteinID:KXG38052.1
UniParc:UPI00081AC113	UniProt:A0A1B6QJF9	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:14343682..14343987

Molecular Weight (calculated)

8806.4 Da

IEP (calculated)

7.416

GRAVY (calculated)

-0.122

Length

80 amino acids

Sequence
(BLAST)

1: MGSTVLKHLA PEISYRSLVA LGIAWVNGTP VSSFDRQDAD RLLFFCSNQC KDQAIQNISY AHLSSWSASL TKDRTTGSIE

Best Arabidopsis Sequence Match ( AT3G43240.1 )
(BLAST)

001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP

Arabidopsis Description

ARID4AT-rich interactive domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ79]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.